PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF03729 (DUF308)

PF03729.13 hits 12 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

lmo0596 similar to unknown proteins (NCBI ptt file) from Listeria monocytogenes EGD-e
3 alignments in 11:175 / 175 (94.3%), covering up to 100.0% of PF03729, 112.5 bits

MAP1317c hypothetical protein (NCBI) from Mycobacterium avium subsp. paratuberculosis str. k10
3 alignments in 28:196 / 197 (85.8%), covering up to 98.6% of PF03729, 88.3 bits

YPO0590 putative membrane protein (NCBI ptt file) from Yersinia pestis CO92
YPTB3468 putative HdeD-like membrane protein. (NCBI) from Yersinia pseudotuberculosis IP 32953
2 alignments in 26:154 / 189 (68.3%), covering up to 98.6% of PF03729, 80.4 bits

Rv1624c Probable conserved membrane protein (NCBI) from Mycobacterium tuberculosis H37Rv
3 alignments in 29:194 / 195 (85.1%), covering up to 98.6% of PF03729, 79.2 bits

EF0025 membrane protein, putative (NCBI ptt file) from Enterococcus faecalis V583
3 alignments in 15:175 / 175 (92.0%), covering up to 100.0% of PF03729, 77.3 bits

VFMJ11_A0408 membrane protein from Aliivibrio fischeri MJ11
VFMJ11_A0408 hypothetical protein (RefSeq) from Vibrio fischeri MJ11
2 alignments in 20:146 / 186 (68.3%), covering up to 100.0% of PF03729, 71.0 bits

RSP_6139 hypothetical protein (NCBI) from Rhodobacter sphaeroides 2.4.1
2 alignments in 9:136 / 174 (73.6%), covering up to 98.6% of PF03729, 70.4 bits

SA2491 hypothetical protein (NCBI) from Staphylococcus aureus subsp. aureus N315
3 alignments in 14:170 / 170 (92.4%), covering up to 100.0% of PF03729, 67.6 bits

c4322 HdeD protein (NCBI ptt file) from Escherichia coli CFT073
2 alignments in 26:154 / 190 (67.9%), covering up to 98.6% of PF03729, 66.3 bits

YhiA / b3511 acid-resistance membrane protein from Escherichia coli K-12 substr. MG1655 (see 2 papers)
hdeD / RF|NP_417968 protein hdeD from Escherichia coli K12 (see 2 papers)
b3511 acid-resistance membrane protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
2 alignments in 26:154 / 190 (67.9%), covering up to 98.6% of PF03729, 66.1 bits

BL1731 hypothetical protein (NCBI) from Bifidobacterium longum NCC2705
2 alignments in 161:326 / 326 (38.0%), covering up to 98.6% of PF03729, 54.3 bits

LBA0860 hypothetical protein (RefSeq) from Lactobacillus acidophilus NCFM
2 alignments in 366:534 / 537 (23.5%), covering up to 98.6% of PF03729, 37.4 bits

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory