Family Search for PF03891 (DUF333)
April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.
PF03891 hits 12 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
A1S_1321 putative hemolysin from Acinetobacter baumannii ATCC 17978
Aligns to 31:77 / 144 (32.6%), covers 95.8% of PF03891, 82.7 bits
- Using comparative genomics to understand molecular features of carbapenem-resistant Acinetobacter baumannii from South Korea causing invasive infections and their clinical implications
Kim, PloS one 2020 - “...22(100) 1 50(92.6) 39(88.6) 0.37 A1S_1180 46(10) 13(100) 1 37(100) 22(100) 1 54(100) 44(100) 1 A1S_1321 45(97.8) 13(100) 0.78 36(97.3) 22(100) 0.63 53(98.1) 44(100) 0.55 A1S_1386 46(10) 13(100) 1 37(100) 22(100) 1 54(100) 44(100) 1 A1S_1510 46(10) 13(100) 1 37(100) 22(100) 1 53(98.1) 44(100) 0.55 A1S_1921...”
- Identification of novel regulatory small RNAs in Acinetobacter baumannii
Sharma, PloS one 2014 - “...of AbsR25 sRNA predicted by bioinformatic approaches is 333 nts and the location is between A1S_1321 and A1S_1322 genes, encoding putative hemolysin and dihydro-dipicolinate synthetase respectively. Northern blotting and RACE mapping showed that the transcript of AbsR25 sRNA was about 164 nts ( Figure S1 )....”
- Acinetobacter baumannii secretes cytotoxic outer membrane protein A via outer membrane vesicles
Jin, PloS one 2011 - “...( n =57). Virulence-associated proteins, including AbOmpA, CsuA/B (A1S_2218), CsuC (A1S_2215), CsuD (A1S_2214), putative hemolysin (A1S_1321), putative serine protease (A1S_2525), Cu/Zn superoxide dismutase (A1S_3143), fimbrial protein (A1S_1510), bacterioferritin (A1S_3175), RND superfamily transporter (A1S_0116), putative RND type efflux pump (A1S_0009), and putative protease (A1S_2470), were found in...”
ABAYE2389 hypothetical protein from Acinetobacter baumannii AYE
Aligns to 31:77 / 144 (32.6%), covers 95.8% of PF03891, 80.6 bits
ABUW_2554 I78 family peptidase inhibitor from Acinetobacter baumannii
Aligns to 31:77 / 144 (32.6%), covers 95.8% of PF03891, 80.6 bits
VCA0594 hemolysin from Vibrio cholerae O1 biovar eltor str. N16961
Aligns to 43:89 / 93 (50.5%), covers 100.0% of PF03891, 78.6 bits
- Structural and Proteomic Changes in Viable but Non-culturable Vibrio cholerae
Brenzinger, Frontiers in microbiology 2019 - “...these, only the putative hemolysin secretion protein VC0199, a putative hemolysin (VC0578), the hemolysin Hlx VCA0594 and the T2SS proteins EpsCEFGL were found with a slightly increased abundance in VBNC cells ( Figure 4 ). Figure 4 Relative protein abundances of proteins associated with pathogenicity. Depicted...”
- A bistable switch and anatomical site control Vibrio cholerae virulence gene expression in the intestine
Nielsen, PLoS pathogens 2010 - “...tcpP (VC0826), hapR (VC0583), tcpH (VC0827), toxS (VC0983), cyaA (VC0122), hapA (VCA0865), hlyA (VCA00219), hlx (VCA0594), cheA1 (VC1397), cheA2 (VC02063), cheA3 (VCA1095) and rrnB (E. coli b3968). Supporting Information Figure S1 V. cholerae rpoS fails to down regulate tcpA expression and to detach from epithelium. The...”
- The Vibrio cholerae flagellar regulatory hierarchy controls expression of virulence factors
Syed, Journal of bacteriology 2009 - “...activity (14); an additional hemolysin gene (hlx; VCA0594) (45); the gene encoding the chitin-binding protein GbpA (VCA0811), which mediates binding to...”
- “...are upregulated in the flagellar mutants: VCA0218, VCA0219, and VCA0594 (Fig. 2B; see also Table S1 in the supplemental material). VCA0219 encodes the "El Tor"...”
YoaF / b1793 DUF333 domain-containing lipoprotein YoaF from Escherichia coli K-12 substr. MG1655 (see paper)
b1793 conserved outer membrane protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 32:78 / 84 (56.0%), covers 100.0% of PF03891, 74.8 bits
- Chemical mimetics of the N-degron pathway alleviate systemic inflammation by activating mitophagy and immunometabolic remodeling
Silwal, Experimental & molecular medicine 2023 - “...lysed for RNA preparation or Western blotting. For autophagic flux analysis, bafilomycin A1 (BafA1) (SigmaAldrich, b1793) was preincubated with the cells for 1.5h at a final concentration of 100nM. RNA preparation and real-time polymerase chain reaction TRIzol reagent (Invitrogen, Waltham, MA, USA; 15596026) was used for...”
- Folliculin Prevents Lysosomal Degradation of Human Papillomavirus To Support Infectious Cell Entry
Ishii, Journal of virology 2023 (secret) - Phosphorylation by casein kinase 2 enhances the interaction between ER-phagy receptor TEX264 and ATG8 proteins
Chino, EMBO reports 2022 (secret) - A screening pipeline identifies a broad-spectrum inhibitor of bacterial AB toxins with cross protection against influenza A virus H1N1 and SARS-CoV-2
Wu, 2021 - MK2 degradation as a sensor of signal intensity that controls stress-induced cell fate
Gutierrez-Prat, Proceedings of the National Academy of Sciences of the United States of America 2021 (secret)
STM1275 putative hemolysin from Salmonella typhimurium LT2
SC1286 putative hemolysin from Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
Aligns to 31:77 / 83 (56.6%), covers 100.0% of PF03891, 74.2 bits
NMBNZ0533_0823 DUF333 domain-containing protein from Neisseria meningitidis NZ-05/33
Aligns to 1:47 / 48 (97.9%), covers 97.9% of PF03891, 72.8 bits
Z2835 orf, hypothetical protein from Escherichia coli O157:H7 EDL933
Aligns to 32:78 / 84 (56.0%), covers 95.8% of PF03891, 72.7 bits
FORC22_3317 DUF333 domain-containing protein from Vibrio parahaemolyticus
VPA0257 hemolysin from Vibrio parahaemolyticus RIMD 2210633
Aligns to 33:79 / 86 (54.7%), covers 97.9% of PF03891, 72.3 bits
- Potential Survival and Pathogenesis of a Novel Strain, Vibrio parahaemolyticus FORC_022, Isolated From a Soy Sauce Marinated Crab by Genome and Transcriptome Analyses
Chung, Frontiers in microbiology 2018 - “...ORFs encoding various hemolysin genes (FORC22_0344, FORC22_0414, FORC22_1716, FORC22_2576, and FORC22_3059 in chromosome I; FORC22_3287, FORC22_3317, and FORC22_3346 in chromosome II) were detected; these genes may be responsible for the virulence of the FORC_022 strain. In addition, various secretion systems including types I, II, III, IV,...”
- iTRAQ-based proteomic profiling of Vibrio parahaemolyticus under various culture conditions
Yang, Proteome science 2015 - “...11 general secretion pathway proteins. Other virulence related proteins such as three hemolysins(GN VP0730, VP2536, VPA0257) and regulator proteins Hfq and rsmA were also significantly identified. Protein quantification and differentiation analysis Proteins with iTRAQ ratios <0.50 or >2.0, p <0.05 were considered significantly different in protein...”
- “...this study. Three hemolysin proteins including putative hemolysins (GN VP0730, GN VP2536) and hemolysin (GN VPA0257) were identified, although TDH production was reported to be affected by environmental factors, such as pH, temperature, and chemicals [ 40 , 41 ], but significant differences in abundance have...”
NGO0350 hypothetical protein from Neisseria gonorrhoeae FA 1090
Aligns to 23:70 / 71 (67.6%), covers 97.9% of PF03891, 71.2 bits
M892_26640 DUF333 domain-containing protein from Vibrio campbellii ATCC BAA-1116
Aligns to 33:79 / 86 (54.7%), covers 95.8% of PF03891, 65.6 bits
- Vibrio campbellii hmgA-mediated pyomelanization impairs quorum sensing, virulence, and cellular fitness
Wang, Frontiers in microbiology 2013 - “...protein Hfq 1.46E-06 2.94 1.96 1.50 R M892_18180 Ecotin precursor 6.37E-05 1.51 0.99 1.53 R M892_26640 Hemolysin 6.13E-08 1.93 0.54 3.57 R M892_05800 Lipoprotein-related protein 6.13E-08 1.20 0.24 5.00 S M892_08695 Hypothetical protein 3.42E-05 1.09 0.40 2.73 S M892_13325 Hypothetical protein 4.02E-07 3.90 1.96 1.99 S...”
- “...down-regulation of several virulence factors in hmgA . However, with the exception of two [hemolysin (M892_26640) and azurin (M892_25430)], the genes encoding these factors were not differentially expressed suggesting that the decreased virulence potential of hmgA was not caused by an overt down-regulation of accepted virulence...”
YdbJ / b4529 DUF333 domain-containing protein YdbJ from Escherichia coli K-12 substr. MG1655 (see paper)
b4529 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 37:84 / 88 (54.5%), covers 95.8% of PF03891, 53.1 bits
Or search for genetic data about PF03891 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory