Family Search for PF03994 (DUF350)

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PF03994 hits 7 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

BC1580 surface protein from Bacillus cereus ATCC 14579
2 alignments in 7:126 / 128 (84.4%), covering up to 100.0% of PF03994, 92.4 bits

• Celastrol Combats Methicillin-Resistant Staphylococcus aureus by Targeting Δ¹ -Pyrroline-5-Carboxylate Dehydrogenase
  Yuan, Advanced science (Weinheim, Baden-Wurttemberg, Germany) 2023
  • “...and Asp Content The Glu and Asp content was measured using the Glu Assay Kit (BC1580, Solarbio, Beijing, China) and Bacteria Asp ELISA Kit (YJ896471, mlbio, Shanghai, China), respectively, in line with the procedures stipulated by the manufacturers. 2.18.7 Intracellular P5C Determination The intracellular P5C content...”

SO3762 hypothetical protein from Shewanella oneidensis MR-1
2 alignments in 21:147 / 299 (36.8%), covering up to 100.0% of PF03994, 82.0 bits

• Transcriptome profiling of Shewanella oneidensis gene expression following exposure to acidic and alkaline pH
  Leaphart, Journal of bacteriology 2006
  • “...thiols such as glutathione (10), and a hypothetical gene (so3762) that was induced under all pH conditions. The repression of the catabolite activator gene crp,...”

Rv2600 PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN from Mycobacterium tuberculosis H37Rv
2 alignments in 7:132 / 133 (82.7%), covering up to 100.0% of PF03994, 81.3 bits

• Genomic characteristics of two most widely used BCG vaccine strains: Danish 1331 and Pasteur 1173P2
  Asadian, BMC genomics 2022
  • “...+ + 99,866 Rv2770c PPE44 PPE family protein PPE44 sSNP & nSNP + - 118,590 Rv2600 - Integral membrane protein Deletion + + 120,392 Rv1866 - Hypothetical protein sSNP & nSNP + + 120,408 Rv3883c myc P1 Membrane-anchored mycosin sSNP & nSNP + + 120,481 Rv0934...”
• Fusion peptide constructs from antigens of M. tuberculosis producing high T-cell mediated immune response
  Arif, PloS one 2022
  • “...of Kenya, South Africa and Zambia [ 8 ]. Another fusion of Ag85B, ESAT-6 and Rv2600, designed for pre- and post-infection vaccination, is also under evaluation for prevention of TB recurrence [ 9 ]. Multistage subunit vaccine consisting of three early stage antigens Rv3620, Rv2608, Rv3619...”
• Detecting the molecular scars of evolution in the Mycobacterium tuberculosis complex by analyzing interrupted coding sequences
  Deshayes, BMC evolutionary biology 2008
  • “...0127 0101 ICDS Enoyl-CoA hydratase EchA21 and lipase LipE Lipid metabolism 0119 (Rv2599 143 aa Rv2600 133 aa ) 0144 0098 0134 ICDS Conserved hypothetical Unknown ICDS number (variable, according to the strain), the size of the predicted protein and its putative function are indicated. The...”
• Expression of membrane proteins from Mycobacterium tuberculosis in Escherichia coli as fusions with maltose binding protein
  Korepanova, Protein expression and purification 2007
  • “...o + o ++ n/a 50 Rv1824 55.2 12.7 4 + ++ +++ +++ 100 n/a Rv2600 56.1 13.6 4 o o o o n/a n/a Rv3065 53.6 11.1 4 o o o o n/a n/a Rv3070 55.7 13.2 4 o o o o n/a n/a...”
• Differential gene expression between Mycobacterium bovis and Mycobacterium tuberculosis
  Rehren, Tuberculosis (Edinburgh, Scotland) 2007
  • “...Rv2490c PEPGRS43 3.7 0.00707 PE PGRS family protein Rv2600 3.8 0.0268 Probable conserved integral membrane protein Rv2648 9.6 0.0126 11 Probable transposase for...”
• The gene expression data of Mycobacterium tuberculosis based on Affymetrix gene chips provide insight into regulatory and hypothetical genes
  Fu, BMC microbiology 2007
  • “...Rv1695 NUOI Rv1312 NUOL NUOD Rv3806C Rv2759C Rv2966C FOLK Rv2879C Rv1780 Rv1271C Rv3693 PLCB DRRC Rv2600 NUOM NUOH Rv0875C Rv3220C Rv3885C MMPL7 Rv2475C LTP1 Rv0236C NUOJ NUOB NUON MMPL9 Rv2752C Rv0177 Rv0176 HEMB PRCA Rv2553C Rv2367C RPLT GID CMK Rv3122 EMBB Rv1303 Rv1907C Rv2792C) Energy production...”
• Cloning and expression of multiple integral membrane proteins from Mycobacterium tuberculosis in Escherichia coli
  Korepanova, Protein science : a publication of the Protein Society 2005
  • “...TM Cloned Rv2398c Rv2433c Rv2446c Rv2507 Rv2532c Rv2599 Rv2600 Rv2620c Rv2639c Rv2684 Rv2719c Rv2723 Rv2876 Rv2937 Rv3004 Rv3044 Rv3069 Rv3070 Rv3155 Rv3162c...”

YjfL / b4184 DUF350 domain-containing inner membrane protein YjfL from Escherichia coli K-12 substr. MG1655 (see paper)
b4184 conserved inner membrane protein from Escherichia coli str. K-12 substr. MG1655
2 alignments in 13:130 / 132 (85.6%), covering up to 100.0% of PF03994, 75.2 bits

• Global analysis of genes regulated by EvgA of the two-component regulatory system in Escherichia coli
  Nishino, Journal of bacteriology 2003
  • “...yfdWe msyB b3510 b2375 b3509 b2369 b3517 b1501 b4184 b2374 b1051 Not known Not known Not known Regulation Metabolism Metabolism Cell structure Metabolism None...”
• Interfering with different steps of protein synthesis explored by transcriptional profiling of Escherichia coli K-12
  Sabina, Journal of bacteriology 2003
  • “...b0730 b1310 b2552 b2125 b0695 b2473 b0037 b3563 b4183 b4184 b2460 b2279 b3120 b3596 b2666 b0359 b1416 b1004 b0425 b2050 b0141 b4205 b1493 0.04 0.07 0.08 0.09...”

SEN4140 hypothetical protein from Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
2 alignments in 13:130 / 132 (81.8%), covering up to 100.0% of PF03994, 74.8 bits

• Single nucleotide polymorphisms that differentiate two subpopulations of Salmonella enteritidis within phage type
  Guard, BMC research notes 2011
  • “...+ (100) + (100) + (100) + (99) - nd - (89) - nd yjfL (SEN4140) + - + - nd + (100) + (99) + (100) + (99) + (100) + (100) + (99) + (100) + (99) + (100) + (99) + (99) +...”

Varpa_5988 DUF350 domain-containing protein from Variovorax paradoxus EPS
Aligns to 17:71 / 72 (76.4%), covers 100.0% of PF03994, 67.0 bits

• Transcriptome profiling of Variovorax paradoxus EPS under different growth conditions reveals regulatory and structural novelty in biofilm formation
  Fredendall, Access microbiology 2020
  • “...hypothetical protein Varpa_2596 6.34 hypothetical protein Varpa_5615 6.07 extracellular liganD-binding receptor Varpa_2330 6.00 glycine dehydrogenase(EC:1.4.4.2) Varpa_5988 5.88 hypothetical protein Varpa_4455 5.85 hypothetical protein Varpa_4664 5.75 two-component transcriptional regulator luxR family Varpa_2423 5.74 hypothetical protein Varpa_1645 5.71 transcriptional regulator marr family Varpa_4080 5.70 outer membrane efflux protein...”

BCG_2624 putative integral membrane protein from Mycobacterium bovis BCG str. Pasteur 1173P2
Aligns to 4:58 / 59 (93.2%), covers 100.0% of PF03994, 46.7 bits

• Transcriptional portrait of M. bovis BCG during biofilm production shows genes differentially expressed during intercellular aggregation and substrate attachment
  Flores-Valdez, Scientific reports 2020
  • “...Orthologous to Rv3131 , part of the DosR-regulon. BCG_3287c BCG_3287c -2.8072 3.32E07 Conserved hypothetical protein BCG_2624 BCG_2624 4.1276 0.009472594 Probable conserved integral membrane protein. 59 aa long. BCG_0112 BCG_0112 4.0751 3.50E24 Hypothetical protein. Orthologous to Rv0079, part of the DosR-regulon. Contains a 46 aa region (out...”

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