PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF04074 (DUF386)

PF04074.12 hits 16 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YjgK / b4252 DUF386 domain-containing toxin-antitoxin biofilm protein TabA from Escherichia coli K-12 substr. MG1655 (see 3 papers)
TABA_ECOLI / P0AF96 Toxin-antitoxin biofilm protein TabA from Escherichia coli (strain K12) (see paper)
b4252 orf, hypothetical protein (VIMSS) from Escherichia coli str. K-12 substr. MG1655
S4500 hypothetical protein (NCBI ptt file) from Shigella flexneri 2a str. 2457T
Aligns to 1:148 / 150 (98.7%), covers 99.3% of PF04074, 153.1 bits

STY4806 conserved hypothetical protein (NCBI ptt file) from Salmonella enterica subsp. enterica serovar Typhi str. CT18
Aligns to 1:148 / 150 (98.7%), covers 99.3% of PF04074, 149.6 bits

HI0227 conserved hypothetical protein (NCBI ptt file) from Haemophilus influenzae Rd KW20
Aligns to 1:151 / 155 (97.4%), covers 100.0% of PF04074, 147.5 bits

STY4129 conserved hypothetical protein (NCBI ptt file) from Salmonella enterica subsp. enterica serovar Typhi str. CT18
Aligns to 1:150 / 154 (97.4%), covers 100.0% of PF04074, 145.2 bits

YiaL / b3576 DUF386 domain-containing protein YiaL from Escherichia coli K-12 substr. MG1655 (see 2 papers)
b3576 hypothetical protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
Aligns to 1:150 / 155 (96.8%), covers 100.0% of PF04074, 140.7 bits

PBPRA2282 conserved hypothetical protein (NCBI) from Photobacterium profundum SS9
Aligns to 1:159 / 163 (97.5%), covers 100.0% of PF04074, 140.4 bits

YhcH / b3221 DUF386 domain-containing protein YhcH from Escherichia coli K-12 substr. MG1655 (see 5 papers)
YHCH_ECOLI / P45424 Uncharacterized protein YhcH from Escherichia coli (strain K12) (see paper)
yhcH / RF|NP_417688 uncharacterized protein yhcH from Escherichia coli K12 (see paper)
b3221 hypothetical protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
Aligns to 1:149 / 154 (96.8%), covers 100.0% of PF04074, 139.5 bits

SPD_1503 hypothetical protein (NCBI) from Streptococcus pneumoniae D39
spr1535 Hypothetical protein (NCBI ptt file) from Streptococcus pneumoniae R6
Aligns to 1:148 / 150 (98.7%), covers 100.0% of PF04074, 137.9 bits

SP_1680 hypothetical protein (RefSeq) from Streptococcus pneumoniae TIGR4
Aligns to 1:148 / 150 (98.7%), covers 99.3% of PF04074, 127.7 bits

SPD_1492 hypothetical protein (NCBI) from Streptococcus pneumoniae D39
Aligns to 1:148 / 150 (98.7%), covers 99.3% of PF04074, 126.5 bits

ESA_03609 hypothetical protein (RefSeq) from Enterobacter sakazakii ATCC BAA-894
ESA_03609 YhcH/YjgK/YiaL family protein from Cronobacter sakazakii ATCC BAA-894
Aligns to 1:148 / 154 (96.1%), covers 99.3% of PF04074, 121.3 bits

RUMGNA_02700 hypothetical protein (RefSeq) from Ruminococcus gnavus ATCC 29149
RUMGNA_02700 YhcH/YjgK/YiaL family protein from [Ruminococcus] gnavus ATCC 29149
Aligns to 1:148 / 149 (99.3%), covers 100.0% of PF04074, 113.9 bits

SAG0037 conserved hypothetical protein (NCBI ptt file) from Streptococcus agalactiae 2603V/R
Aligns to 1:145 / 147 (98.6%), covers 99.3% of PF04074, 113.5 bits

c0758 Hypthetical protein (NCBI ptt file) from Escherichia coli CFT073
Aligns to 1:150 / 156 (96.2%), covers 100.0% of PF04074, 95.9 bits

EbgC / b3077 DUF386 domain-containing evolved β-D-galactosidase subunit β from Escherichia coli K-12 substr. MG1655 (see paper)
EBGC_ECOLI / P0AC73 Evolved beta-galactosidase subunit beta from Escherichia coli (strain K12) (see paper)
b3077 cryptic beta-D-galactosidase, beta subunit (NCBI) from Escherichia coli str. K-12 substr. MG1655
Aligns to 1:140 / 149 (94.0%), covers 99.3% of PF04074, 86.5 bits

HP1029 hypothetical protein (NCBI ptt file) from Helicobacter pylori 26695
Aligns to 2:170 / 178 (94.9%), covers 79.7% of PF04074, 73.7 bits

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory