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Family Search for PF04241 (DUF423)

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Running HMMer for PF04241

PF04241 hits 11 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

SAOUHSC_00567 hypothetical protein from Staphylococcus aureus subsp. aureus NCTC 8325
SA0540 hypothetical protein from Staphylococcus aureus subsp. aureus N315
SAUSA300_0565 hypothetical protein from Staphylococcus aureus subsp. aureus USA300_FPR3757
Aligns to 18:103 / 122 (70.5%), covers 98.9% of PF04241, 107.4 bits

WP_042478071 DUF423 domain-containing protein from Bacillus ndiopicus
Aligns to 18:108 / 123 (74.0%), covers 100.0% of PF04241, 104.9 bits

LMRG_00353 hypothetical protein from Listeria monocytogenes 10403S
lmo0666 similar to unknown protein from Listeria monocytogenes EGD-e
Aligns to 18:103 / 125 (68.8%), covers 100.0% of PF04241, 102.2 bits

KZA74_06265 DUF423 domain-containing protein from Acinetobacter baumannii
Aligns to 16:102 / 121 (71.9%), covers 100.0% of PF04241, 94.8 bits

HI1073 conserved hypothetical protein from Haemophilus influenzae Rd KW20
Aligns to 19:104 / 124 (69.4%), covers 100.0% of PF04241, 90.2 bits

YgdD / b2807 DUF423 domain-containing inner membrane protein YgdD from Escherichia coli K-12 substr. MG1655 (see 4 papers)
YGDD_ECOLI / P0ADR2 UPF0382 inner membrane protein YgdD from Escherichia coli (strain K12) (see paper)
Aligns to 20:106 / 131 (66.4%), covers 100.0% of PF04241, 84.3 bits

orf2 / AAC13743.1 unknown from Escherichia coli (see paper)
Aligns to 20:106 / 131 (66.4%), covers 100.0% of PF04241, 83.5 bits

YLKC_SCHPO / Q9P7G8 UPF0382 membrane protein C1782.12c from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
Aligns to 17:106 / 118 (76.3%), covers 100.0% of PF04241, 82.9 bits

AT2G04900 hypothetical protein from Arabidopsis thaliana
Aligns to 37:116 / 128 (62.5%), covers 100.0% of PF04241, 81.4 bits

Q8N2U0 Transmembrane protein 256 from Homo sapiens
NP_689979 transmembrane protein 256 precursor from Homo sapiens
Aligns to 22:101 / 113 (70.8%), covers 98.9% of PF04241, 69.5 bits

F1LYI7 Transmembrane protein 256 from Rattus norvegicus
Aligns to 22:101 / 113 (70.8%), covers 100.0% of PF04241, 69.1 bits

Or search for genetic data about PF04241 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory