Family Search for PF04241 (DUF423)
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Running HMMer for PF04241
PF04241 hits 11 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
SAOUHSC_00567 hypothetical protein from Staphylococcus aureus subsp. aureus NCTC 8325
SA0540 hypothetical protein from Staphylococcus aureus subsp. aureus N315
SAUSA300_0565 hypothetical protein from Staphylococcus aureus subsp. aureus USA300_FPR3757
Aligns to 18:103 / 122 (70.5%), covers 98.9% of PF04241, 107.4 bits
WP_042478071 DUF423 domain-containing protein from Bacillus ndiopicus
Aligns to 18:108 / 123 (74.0%), covers 100.0% of PF04241, 104.9 bits
LMRG_00353 hypothetical protein from Listeria monocytogenes 10403S
lmo0666 similar to unknown protein from Listeria monocytogenes EGD-e
Aligns to 18:103 / 125 (68.8%), covers 100.0% of PF04241, 102.2 bits
- Listeria monocytogenes σA Is Sufficient to Survive Gallbladder Bile Exposure
Boonmee, Frontiers in microbiology 2019 - “...LMRG_00092 lmo0399 PTS system, IIB component 3.52 0.00 LMRG_00352 lmo0665 LMRG_00351-LMRG_00353 Hypothetical protein 2.32 0.01 LMRG_00353 lmo0666 Domain-containing protein 2.12 0.01 LMRG_00369 lmo0681 Flagellar biosynthesis regulator FlhF 2.01 0.00 LMRG_00373 lmo0685 motA motAB Flagellar motor rotation protein MotA 2.43 0.00 LMRG_00852 lmo1400 LMRG_00852-LMRG_00854 phosphinothricin N-acetyltransferase 2.06...”
- Listeria monocytogenes σA Is Sufficient to Survive Gallbladder Bile Exposure
Boonmee, Frontiers in microbiology 2019 - “...lmo0399 PTS system, IIB component 3.52 0.00 LMRG_00352 lmo0665 LMRG_00351-LMRG_00353 Hypothetical protein 2.32 0.01 LMRG_00353 lmo0666 Domain-containing protein 2.12 0.01 LMRG_00369 lmo0681 Flagellar biosynthesis regulator FlhF 2.01 0.00 LMRG_00373 lmo0685 motA motAB Flagellar motor rotation protein MotA 2.43 0.00 LMRG_00852 lmo1400 LMRG_00852-LMRG_00854 phosphinothricin N-acetyltransferase 2.06 0.00...”
KZA74_06265 DUF423 domain-containing protein from Acinetobacter baumannii
Aligns to 16:102 / 121 (71.9%), covers 100.0% of PF04241, 94.8 bits
HI1073 conserved hypothetical protein from Haemophilus influenzae Rd KW20
Aligns to 19:104 / 124 (69.4%), covers 100.0% of PF04241, 90.2 bits
YgdD / b2807 DUF423 domain-containing inner membrane protein YgdD from Escherichia coli K-12 substr. MG1655 (see 4 papers)
YGDD_ECOLI / P0ADR2 UPF0382 inner membrane protein YgdD from Escherichia coli (strain K12) (see paper)
Aligns to 20:106 / 131 (66.4%), covers 100.0% of PF04241, 84.3 bits
- function: May be a peptide transporter or a protein that facilitates peptide internalization (PubMed:26860543).
disruption phenotype: Mutants show a slight decrease in the internalization level of some proline-rich antimicrobial peptides of eukaryotic origin.
orf2 / AAC13743.1 unknown from Escherichia coli (see paper)
Aligns to 20:106 / 131 (66.4%), covers 100.0% of PF04241, 83.5 bits
YLKC_SCHPO / Q9P7G8 UPF0382 membrane protein C1782.12c from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
Aligns to 17:106 / 118 (76.3%), covers 100.0% of PF04241, 82.9 bits
AT2G04900 hypothetical protein from Arabidopsis thaliana
Aligns to 37:116 / 128 (62.5%), covers 100.0% of PF04241, 81.4 bits
- Investigation for a multi-silique trait in Brassica napus by alternative splicing analysis
Chai, PeerJ 2020 - “...the transcription factor TFIIIC (tau55-related protein); (3) AT1G14800 encodes a nucleic acid-binding, OB-fold-like protein; (4) AT2G04900 encodes an unknown protein; (5) AT3G10070 encodes one of two Arabidopsis proteins with similarity to the TBP-associated factor, TAF12; (6) AT1G15060 encodes an alpha/beta hydrolase family protein; (7) AT3G54620 encodes...”
- “...(GAUT14) BnaA02g03080D AT3G15420 Transcription factor TFIIIC, Tau55-related protein BnaA04g16220D AT1G14800 Nucleic acid-binding, OB-fold-like protein BnaA07g04500D AT2G04900 Unknown protein BnaA09g45000D AT3G10070 TBP-ASSOCIATED FACTOR 12 (TAF12) BnaA09g45260D AT1G15060 Uncharacterized conserved protein UCP031088, alpha/beta hydrolase BnaAnng30260D AT3G54620 BASIC LEUCINE ZIPPER 25 (BZIP25) BnaC02g06440D AT5G16210 HEAT repeat-containing protein BnaC06g16950D AT3G59000...”
- The Receptor for Activated C Kinase in Plant Signaling: Tale of a Promiscuous Little Molecule
Islas-Flores, Frontiers in plant science 2015 - “...phosphatase 2C 15 family protein Unknown c A. thaliana Klopffleisch et al., 2011 112 AtRACK1A AT2G04900 Uncharacterized protein Unknown e A. thaliana Kundu et al., 2013 113 AtRACK1A AT2G10940 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Lipid transport e A. thaliana Kundu et al., 2013...”
- Synergistic use of plant-prokaryote comparative genomics for functional annotations
Gerdes, BMC genomics 2011 - “...COG3146 Pterin-dependent enzyme Xanthomonas campestris protein lacks benzoate hydroxylase activity in complementation assay 236 22 At2g04900 2363 ywdK COG2363 Thiamine-related transporter E. coli protein does not mediate uptake of thiazole or hydroxymethylpyrminidine 221 23 At1g09150 2016 rRNA modification Archaea; DOE-COG2016 Ribosome assembly/translation termination In progress in...”
Q8N2U0 Transmembrane protein 256 from Homo sapiens
NP_689979 transmembrane protein 256 precursor from Homo sapiens
Aligns to 22:101 / 113 (70.8%), covers 98.9% of PF04241, 69.5 bits
F1LYI7 Transmembrane protein 256 from Rattus norvegicus
Aligns to 22:101 / 113 (70.8%), covers 100.0% of PF04241, 69.1 bits
- iTRAQ-based proteomics analysis on insomnia rats treated with Mongolian medical warm acupuncture
Xu, Bioscience reports 2020 - “...0.012393709 A0A0G2K4U7 Protein Mtus2 1.232703408 0.01391488 D4A1U8 Protein RGD1311744 1.277139639 0.014144665 P24090 Alpha-2-HS-glycoprotein 1.296358037 0.01441777 F1LYI7 Protein Tmem256 1.207978689 0.015866603 D3ZA53 Protein Pnmal1 1.421893598 0.016281749 Q9EQP5 Prolargin 1.273012448 0.017232379 M0RA79 Protein LOC691828 1.273971816 0.019054036 Q95571 RT1.A(U) alpha chain (Fragment) 1.266842428 0.019175113 M0R6Y8 Phosphoglycerate kinase 1.22539767 0.024665028...”
Or search for genetic data about PF04241 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory