PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF04285 (DUF444)

PF04285.12 hits 19 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

VP0986 conserved hypothetical protein (NCBI ptt file) from Vibrio parahaemolyticus RIMD 2210633
Aligns to 3:421 / 423 (99.1%), covers 100.0% of PF04285, 623.9 bits

c2189 Hypothetical protein yeaH (NCBI ptt file) from Escherichia coli CFT073
Aligns to 3:421 / 427 (98.1%), covers 99.8% of PF04285, 620.3 bits

YeaH / b1784 DUF444 domain-containing protein YeaH from Escherichia coli K-12 substr. MG1655 (see 3 papers)
b1784 yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) from Escherichia coli BW25113
b1784 hypothetical protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
P76235 UPF0229 protein YeaH from Escherichia coli (strain K12)
Aligns to 3:421 / 427 (98.1%), covers 99.8% of PF04285, 619.7 bits

STM1284 putative cytoplasmic protein (NCBI ptt file) from Salmonella typhimurium LT2
Aligns to 3:422 / 428 (98.1%), covers 99.8% of PF04285, 618.5 bits

Sama_1922 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) from Shewanella amazonensis SB2B
Aligns to 3:421 / 423 (99.1%), covers 99.8% of PF04285, 616.1 bits

SO2883 yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) from Shewanella oneidensis MR-1
Aligns to 3:420 / 422 (99.1%), covers 99.8% of PF04285, 614.2 bits

Pf6N2E2_4800 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) from Pseudomonas fluorescens FW300-N2E2
Aligns to 3:420 / 423 (98.8%), covers 99.5% of PF04285, 599.4 bits

PA0587 hypothetical protein (NCBI) from Pseudomonas aeruginosa PAO1
Aligns to 3:420 / 423 (98.8%), covers 99.5% of PF04285, 599.1 bits

AO356_14310 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) from Pseudomonas fluorescens FW300-N2C3
Aligns to 3:420 / 423 (98.8%), covers 99.5% of PF04285, 598.0 bits

Pfl01_5140 hypothetical protein (RefSeq) from Pseudomonas fluorescens Pf0-1
Aligns to 3:420 / 423 (98.8%), covers 99.5% of PF04285, 597.1 bits

PFL_5654 Protein of unknown function (DUF444) superfamily (NCBI) from Pseudomonas fluorescens Pf-5
Aligns to 3:421 / 424 (98.8%), covers 99.5% of PF04285, 595.8 bits

PFLU5583 hypothetical protein (RefSeq) from Pseudomonas fluorescens SBW25
Aligns to 3:420 / 423 (98.8%), covers 99.5% of PF04285, 595.8 bits

AO353_07340 yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) from Pseudomonas fluorescens FW300-N2E3
Aligns to 3:420 / 423 (98.8%), covers 99.5% of PF04285, 593.0 bits

SMc01266 CONSERVED HYPOTHETICAL PROTEIN (NCBI ptt file) from Sinorhizobium meliloti 1021
Aligns to 3:431 / 438 (97.9%), covers 99.8% of PF04285, 551.6 bits

CAC0580 Similar to yhbH B.subtilis (NCBI ptt file) from Clostridium acetobutylicum ATCC 824
2 alignments in 3:388 / 391 (98.7%), covering up to 48.7% of PF04285, 419.8 bits

CPR_1333 Protein of unknown function (DUF444) superfamily (NCBI) from Clostridium perfringens SM101
2 alignments in 3:385 / 392 (97.7%), covering up to 48.7% of PF04285, 416.4 bits

BG05_RS28400 sporulation protein YhbH from Bacillus mycoides
2 alignments in 10:385 / 391 (96.2%), covering up to 47.5% of PF04285, 346.9 bits

YHBH_BACSU / P45742 Stress response UPF0229 protein YhbH from Bacillus subtilis (strain 168) (see paper)
BSU08980 hypothetical protein (RefSeq) from Bacillus subtilis subsp. subtilis str. 168
2 alignments in 10:383 / 392 (95.4%), covering up to 45.8% of PF04285, 342.7 bits

GSU3342 conserved domain protein (NCBI) from Geobacter sulfurreducens PCA
2 alignments in 71:415 / 447 (77.2%), covering up to 32.1% of PF04285, 108.4 bits

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory