PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF04338 (DUF481)

PF04338.12 hits 13 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

XAC0623 conserved hypothetical protein (NCBI ptt file) from Xanthomonas axonopodis pv. citri str. 306
Aligns to 46:265 / 266 (82.7%), covers 99.5% of PF04338, 194.6 bits

XCC3510 conserved hypothetical protein (NCBI ptt file) from Xanthomonas campestris pv. campestris str. ATCC 33913
Aligns to 46:265 / 266 (82.7%), covers 99.5% of PF04338, 193.5 bits

STM1327 putative salt-induced outer membrane protein (NCBI ptt file) from Salmonella typhimurium LT2
Aligns to 47:252 / 252 (81.7%), covers 99.1% of PF04338, 186.5 bits

YdiY / b1722 acid-inducible putative outer membrane protein YdiY from Escherichia coli K-12 substr. MG1655 (see 4 papers)
b1722 hypothetical protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
Aligns to 47:252 / 252 (81.7%), covers 99.1% of PF04338, 186.0 bits

PP1357 conserved hypothetical protein (NCBI ptt file) from Pseudomonas putida KT2440
Aligns to 167:375 / 375 (55.7%), covers 100.0% of PF04338, 174.2 bits

XF1628 hypothetical protein (NCBI ptt file) from Xylella fastidiosa 9a5c
Aligns to 63:282 / 283 (77.7%), covers 99.5% of PF04338, 171.7 bits

PA4390 hypothetical protein (NCBI) from Pseudomonas aeruginosa PAO1
Aligns to 128:335 / 335 (62.1%), covers 100.0% of PF04338, 168.7 bits

PSPTO_4381 conserved hypothetical protein (NCBI ptt file) from Pseudomonas syringae pv. tomato str. DC3000
Aligns to 127:335 / 335 (62.4%), covers 100.0% of PF04338, 164.1 bits

Pro1529 Homolog of salt-induced outer membrane prototein (NCBI) from Prochlorococcus marinus str. SS120
Aligns to 81:296 / 296 (73.0%), covers 100.0% of PF04338, 143.9 bits

PA4391 hypothetical protein (NCBI) from Pseudomonas aeruginosa PAO1
Aligns to 129:333 / 333 (61.6%), covers 97.2% of PF04338, 112.0 bits

PG1685 hypothetical protein (NCBI) from Porphyromonas gingivalis W83
Aligns to 52:259 / 260 (80.0%), covers 74.5% of PF04338, 33.2 bits

OmpG / b1319 outer membrane porin G from Escherichia coli K-12 substr. MG1655 (see 16 papers)
OMPG_ECOLI / P76045 Outer membrane protein G from Escherichia coli (strain K12) (see paper)
b1319 outer membrane porin (NCBI) from Escherichia coli str. K-12 substr. MG1655
NP_415835 outer membrane porin G from Escherichia coli str. K-12 substr. MG1655
Aligns to 91:212 / 301 (40.5%), covers 50.9% of PF04338, 27.9 bits

Smlt0955 putative outer membrane protein (RefSeq) from Stenotrophomonas maltophilia K279a
Aligns to 14:172 / 366 (43.4%), covers 66.5% of PF04338, 22.2 bits

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory