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Family Search for PF04341 (DUF485)

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Running HMMer for PF04341

PF04341 hits 27 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

AZOBR_RS02935 small component of pyruvate transporter (yjcH-like) from Azospirillum brasilense Sp245
Aligns to 9:97 / 100 (89.0%), covers 98.9% of PF04341, 125.6 bits

PFLU1813 hypothetical protein from Pseudomonas fluorescens SBW25
Aligns to 10:99 / 103 (87.4%), covers 98.9% of PF04341, 121.9 bits

PS417_08860 small component of pyruvate transporter (yjcH-like) from Pseudomonas simiae WCS417
Aligns to 10:99 / 103 (87.4%), covers 98.9% of PF04341, 121.6 bits

D9Q971 DUF485 domain-containing protein from Corynebacterium pseudotuberculosis (strain C231)
Aligns to 22:109 / 113 (77.9%), covers 97.8% of PF04341, 119.5 bits

Cp1002B_2057 DUF485 domain-containing protein from Corynebacterium pseudotuberculosis
Aligns to 22:109 / 113 (77.9%), covers 97.8% of PF04341, 119.5 bits

PP1742 conserved hypothetical protein from Pseudomonas putida KT2440
Aligns to 10:99 / 103 (87.4%), covers 98.9% of PF04341, 118.7 bits

Pf1N1B4_3672 small component of pyruvate transporter (yjcH-like) from Pseudomonas fluorescens FW300-N1B4
Aligns to 10:99 / 103 (87.4%), covers 98.9% of PF04341, 118.1 bits

Pf6N2E2_5848 small component of pyruvate transporter (yjcH-like) from Pseudomonas fluorescens FW300-N2E2
Aligns to 10:99 / 103 (87.4%), covers 98.9% of PF04341, 114.9 bits

blr4114 blr4114 from Bradyrhizobium japonicum USDA 110
Aligns to 8:96 / 100 (89.0%), covers 98.9% of PF04341, 114.6 bits

PA3235 hypothetical protein from Pseudomonas aeruginosa PAO1
Aligns to 10:99 / 103 (87.4%), covers 97.8% of PF04341, 113.3 bits

y0509 hypothetical protein from Yersinia pestis KIM
Aligns to 10:99 / 103 (87.4%), covers 97.8% of PF04341, 113.0 bits

cg0952 putative integral membrane protein from Corynebacterium glutamicum ATCC 13032
Aligns to 22:109 / 113 (77.9%), covers 100.0% of PF04341, 112.6 bits

NBC2815_03739 DUF485 domain-containing protein from Xanthomonas fragariae
Aligns to 13:101 / 105 (84.8%), covers 98.9% of PF04341, 111.6 bits

STM4274 putative inner membrane protein from Salmonella typhimurium LT2
Aligns to 10:99 / 104 (86.5%), covers 97.8% of PF04341, 110.5 bits

STY4472 putative membrane protein from Salmonella enterica subsp. enterica serovar Typhi str. CT18
t4180 putative membrane protein from Salmonella enterica subsp. enterica serovar Typhi Ty2
Aligns to 10:99 / 104 (86.5%), covers 97.8% of PF04341, 110.5 bits

SCO1823 integral membrane protein from Streptomyces coelicolor A3(2)
Aligns to 31:118 / 124 (71.0%), covers 98.9% of PF04341, 110.2 bits

UTI89_C4658 hypothetical protein YjcH from Escherichia coli UTI89
ECs5050 hypothetical protein from Escherichia coli O157:H7 str. Sakai
Aligns to 10:99 / 104 (86.5%), covers 97.8% of PF04341, 109.7 bits

b4068 required for glycolate transport, with actP from Escherichia coli BW25113
YjcH / b4068 DUF485 domain-containing inner membrane protein YjcH from Escherichia coli K-12 substr. MG1655 (see 2 papers)
b4068 conserved inner membrane protein involved in acetate transport from Escherichia coli str. K-12 substr. MG1655
Aligns to 10:99 / 104 (86.5%), covers 97.8% of PF04341, 109.7 bits

PP_3273 conserved hypothetical protein from Pseudomonas putida KT2440
Aligns to 10:98 / 102 (87.3%), covers 97.8% of PF04341, 108.3 bits

DJ41_3173 DUF485 domain-containing protein from Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841
A1S_3301 hypothetical protein from Acinetobacter baumannii ATCC 17978
Aligns to 10:98 / 110 (80.9%), covers 96.6% of PF04341, 102.7 bits

GSU2353 conserved hypothetical protein from Geobacter sulfurreducens PCA
Aligns to 12:99 / 102 (86.3%), covers 97.8% of PF04341, 93.9 bits

PD1295 conserved hypothetical protein from Xylella fastidiosa Temecula1
Aligns to 14:102 / 106 (84.0%), covers 98.9% of PF04341, 90.2 bits

PP_2796 conserved hypothetical protein from Pseudomonas putida KT2440
Aligns to 10:99 / 107 (84.1%), covers 97.8% of PF04341, 88.6 bits

PCLA_07r0386, WP_074983811 DUF485 domain-containing protein from Pseudomonas citronellolis
Aligns to 16:105 / 109 (82.6%), covers 97.8% of PF04341, 87.9 bits

DBX28_14830 DUF485 domain-containing protein from Pseudomonas aeruginosa
Aligns to 10:99 / 107 (84.1%), covers 97.8% of PF04341, 86.5 bits

BAS1517 conserved hypothetical protein from Bacillus anthracis str. Sterne
Aligns to 21:106 / 113 (76.1%), covers 97.8% of PF04341, 86.2 bits

RHA1_ro02848 hypothetical protein from Rhodococcus sp. RHA1
Aligns to 11:94 / 97 (86.6%), covers 92.1% of PF04341, 46.2 bits

Or search for genetic data about PF04341 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory