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Family Search for PF04343 (DUF488)

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Running HMMer for PF04343

PF04343 hits 20 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

Msed_0871 protein of unknown function DUF488 from Metallosphaera sedula DSM 5348
Aligns to 10:117 / 129 (83.7%), covers 100.0% of PF04343, 119.1 bits

BBMN68_520 DUF488 domain-containing protein from Bifidobacterium longum subsp. longum BBMN68
Aligns to 4:112 / 113 (96.5%), covers 99.2% of PF04343, 118.5 bits

SCA_2018 DUF488 family protein from Staphylococcus carnosus subsp. carnosus TM300
Sca_2018 hypothetical protein from Staphylococcus carnosus subsp. carnosus TM300
Aligns to 4:117 / 123 (92.7%), covers 100.0% of PF04343, 118.3 bits

BAB2_0759 Protein of unknown function DUF488 from Brucella melitensis biovar Abortus 2308
Q8YBU9 Uroporphyrin-iii c-methyltransferase from Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094)
Aligns to 5:113 / 116 (94.0%), covers 99.2% of PF04343, 118.1 bits

NE2305 conserved hypothetical protein from Nitrosomonas europaea ATCC 19718
Aligns to 14:139 / 182 (69.2%), covers 99.2% of PF04343, 115.3 bits

BCAM2139 hypothetical protein from Burkholderia cenocepacia J2315
Aligns to 14:139 / 186 (67.7%), covers 99.2% of PF04343, 115.0 bits

SACOL0218 hypothetical protein from Staphylococcus aureus subsp. aureus COL
SA0230 hypothetical protein from Staphylococcus aureus subsp. aureus N315
SAOUHSC_00202 hypothetical protein from Staphylococcus aureus subsp. aureus NCTC 8325
SAUSA300_0232 hypothetical protein from Staphylococcus aureus subsp. aureus USA300_FPR3757
NWMN_0174 hypothetical protein from Staphylococcus aureus subsp. aureus str. Newman
USA300HOU_RS01225 DUF488 domain-containing protein from Staphylococcus aureus subsp. aureus USA300_TCH1516
Aligns to 4:116 / 118 (95.8%), covers 99.2% of PF04343, 112.4 bits

pRL80098 hypothetical protein from Rhizobium leguminosarum bv. viciae 3841
Aligns to 13:133 / 162 (74.7%), covers 98.3% of PF04343, 110.8 bits

YeaO / b1792 DUF488 domain-containing protein YeaO from Escherichia coli K-12 substr. MG1655
yeaO / RF|NP_416306 uncharacterized protein yeaO from Escherichia coli K12 (see paper)
b1792 orf, hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 4:112 / 115 (94.8%), covers 99.2% of PF04343, 110.3 bits

SC1288 putative cytoplasmic protein from Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
STM1277 putative cytoplasmic protein from Salmonella typhimurium LT2
Aligns to 4:112 / 115 (94.8%), covers 99.2% of PF04343, 107.5 bits

XC_2584 hypothetical protein from Xanthomonas campestris pv. campestris str. 8004
Aligns to 36:158 / 205 (60.0%), covers 99.2% of PF04343, 106.7 bits

PA1065 hypothetical protein from Pseudomonas aeruginosa PAO1
Aligns to 28:136 / 157 (69.4%), covers 99.2% of PF04343, 104.8 bits

WP_061869012 DUF488 family protein from Prevotella intermedia
Aligns to 8:119 / 122 (91.8%), covers 100.0% of PF04343, 103.1 bits

Saci_2184 conserved Prokaryal protein from Sulfolobus acidocaldarius DSM 639
Aligns to 3:108 / 114 (93.0%), covers 100.0% of PF04343, 97.8 bits

SiRe_0629 DUF488 domain-containing protein from Sulfolobus islandicus REY15A
Aligns to 3:108 / 115 (92.2%), covers 100.0% of PF04343, 96.6 bits

Rv3073c hypothetical protein from Mycobacterium tuberculosis H37Rv
Aligns to 8:115 / 118 (91.5%), covers 99.2% of PF04343, 94.7 bits

CD3614 hypothetical protein from Clostridium difficile 630
CD630DERM_36140 DUF488 domain-containing protein from Clostridioides difficile
Aligns to 12:131 / 205 (58.5%), covers 95.9% of PF04343, 74.7 bits

Saci_2166 hypothetical protein from Sulfolobus acidocaldarius DSM 639
Aligns to 3:108 / 116 (91.4%), covers 100.0% of PF04343, 73.1 bits

Synpcc7942_0758 hypothetical protein from Synechococcus elongatus PCC 7942
Aligns to 22:128 / 140 (76.4%), covers 96.7% of PF04343, 61.1 bits

D1832_RS13660, WP_118914870 DUF488 domain-containing protein from Dermacoccus abyssi
Aligns to 13:147 / 163 (82.8%), covers 97.5% of PF04343, 54.8 bits

Or search for genetic data about PF04343 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory