PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF04379 (DUF525)

PF04379.14 hits 10 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

PA0591 hypothetical protein (NCBI) from Pseudomonas aeruginosa PAO1
Aligns to 18:104 / 126 (69.0%), covers 97.7% of PF04379, 123.2 bits

ApaG / b0050 DUF525 domain-containing protein ApaG from Escherichia coli K-12 substr. MG1655 (see 4 papers)
S0049 hypothetical protein (NCBI ptt file) from Shigella flexneri 2a str. 2457T
b0050 hypothetical protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
c0063 ApaG protein (NCBI ptt file) from Escherichia coli CFT073
Aligns to 17:103 / 125 (69.6%), covers 97.7% of PF04379, 114.9 bits

XP_016873022 F-box only protein 3 isoform X4 from Homo sapiens
Aligns to 132:222 / 309 (29.4%), covers 97.7% of PF04379, 102.1 bits

FBX3_HUMAN / Q9UK99 F-box only protein 3 from Homo sapiens (Human) (see paper)
Aligns to 294:384 / 471 (19.3%), covers 97.7% of PF04379, 101.3 bits

XP_006234719 F-box only protein 3 isoform X2 from Rattus norvegicus
Aligns to 294:384 / 417 (21.8%), covers 97.7% of PF04379, 99.8 bits

NP_997598 F-box only protein 3 isoform 1 from Mus musculus
Aligns to 294:384 / 480 (19.0%), covers 97.7% of PF04379, 99.5 bits

NP_080665 polymerase delta-interacting protein 2 from Mus musculus
Aligns to 252:338 / 368 (23.6%), covers 95.4% of PF04379, 93.4 bits

NP_001277074 polymerase delta-interacting protein 2 isoform 2 from Homo sapiens
Aligns to 234:320 / 350 (24.9%), covers 95.4% of PF04379, 93.4 bits

PDIP2_HUMAN / Q9Y2S7 Polymerase delta-interacting protein 2; 38 kDa DNA polymerase delta interaction protein; p38 from Homo sapiens (Human) (see paper)
Aligns to 252:338 / 368 (23.6%), covers 95.4% of PF04379, 93.3 bits

SKI16_ARATH / Q9LND7 F-box protein SKIP16; SKP1-interacting partner 16 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
AT1G06110 SKIP16 (SKP1/ASK-interacting protein 16); protein binding (RefSeq) from Arabidopsis thaliana
Aligns to 314:409 / 436 (22.0%), covers 93.1% of PF04379, 87.1 bits

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory