PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF04393 (DUF535)

PF04393.13 hits 21 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

y2816 putative enzyme (NCBI ptt file) from Yersinia pestis KIM
YPO1363 putative virulence factor (NCBI ptt file) from Yersinia pestis CO92
Aligns to 32:312 / 315 (89.2%), covers 98.9% of PF04393, 334.5 bits

YbjX / b0877 DUF535 domain-containing protein YbjX from Escherichia coli K-12 substr. MG1655 (see 3 papers)
Aligns to 47:326 / 330 (84.8%), covers 99.3% of PF04393, 333.6 bits

c1012 Hypothetical protein ybjX (NCBI ptt file) from Escherichia coli CFT073
Aligns to 47:326 / 330 (84.8%), covers 99.3% of PF04393, 332.5 bits

KPN_02355 putative enzyme (RefSeq) from Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Aligns to 34:314 / 322 (87.3%), covers 98.9% of PF04393, 330.4 bits

STM0940 Homolog of virK (NCBI ptt file) from Salmonella typhimurium LT2
Aligns to 39:318 / 322 (87.0%), covers 98.9% of PF04393, 326.5 bits

Ent638_1394 protein of unknown function DUF535 (RefSeq) from Enterobacter sp. 638
Aligns to 34:314 / 318 (88.4%), covers 98.9% of PF04393, 321.6 bits

STM2781 virulence gene; homologous sequence to virK in Shigella (NCBI ptt file) from Salmonella typhimurium LT2
NP_461707 VirG localization protein VirK from Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Aligns to 29:306 / 309 (90.0%), covers 99.3% of PF04393, 305.9 bits

Ent638_2409 protein of unknown function DUF535 (RefSeq) from Enterobacter sp. 638
Aligns to 31:311 / 313 (89.8%), covers 98.9% of PF04393, 302.7 bits

NTHI0592 hypothetical protein (RefSeq) from Haemophilus influenzae 86-028NP
Aligns to 23:290 / 291 (92.1%), covers 99.3% of PF04393, 300.5 bits

R2866_0112 DUF535 domain-containing protein from Haemophilus influenzae R2866
Aligns to 23:290 / 291 (92.1%), covers 99.3% of PF04393, 299.9 bits

HI0461 conserved hypothetical protein (NCBI ptt file) from Haemophilus influenzae Rd KW20
Aligns to 23:290 / 291 (92.1%), covers 99.3% of PF04393, 299.2 bits

CGSHi3655_02894 hypothetical protein (RefSeq) from Haemophilus influenzae 3655
Aligns to 23:290 / 291 (92.1%), covers 99.3% of PF04393, 297.7 bits

CP0237 VirK, required for proper localization of IcsA (VirG) at the surface of bacteria (NCBI) from Shigella flexneri 2a str. 301
Aligns to 25:301 / 316 (87.7%), covers 98.6% of PF04393, 292.4 bits

pCoo045 VirK (NCBI) from Escherichia coli
Aligns to 25:301 / 316 (87.7%), covers 98.6% of PF04393, 284.9 bits

APP7_0385 hypothetical protein (RefSeq) from Actinobacillus pleuropneumoniae serovar 7 str. AP76
APL_0363 hypothetical protein (NCBI) from Actinobacillus pleuropneumoniae L20
Aligns to 19:287 / 290 (92.8%), covers 98.6% of PF04393, 282.0 bits

VC1317 conserved hypothetical protein (NCBI ptt file) from Vibrio cholerae O1 biovar eltor str. N16961
Aligns to 23:295 / 306 (89.2%), covers 98.9% of PF04393, 270.6 bits

R2866_1281 DUF535 domain-containing protein from Haemophilus influenzae R2866
Aligns to 26:288 / 292 (90.1%), covers 97.5% of PF04393, 264.7 bits

PP_3138 VirK domain protein (NCBI ptt file) from Pseudomonas putida KT2440
Aligns to 16:297 / 333 (84.7%), covers 98.9% of PF04393, 240.3 bits

Cj1069 hypothetical protein Cj1069 (NCBI ptt file) from Campylobacter jejuni subsp. jejuni NCTC 11168
Aligns to 16:282 / 288 (92.7%), covers 98.2% of PF04393, 222.4 bits

CJJ81176_1087 hypothetical protein (NCBI) from Campylobacter jejuni subsp. jejuni 81-176
Aligns to 16:282 / 288 (92.7%), covers 97.9% of PF04393, 218.2 bits

P32181 Membrane protein LapB from Mannheimia haemolytica
Aligns to 18:225 / 225 (92.4%), covers 75.8% of PF04393, 193.8 bits

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory