PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF04461 (DUF520)

PF04461.13 hits 22 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

OFBG_01674 YajQ family cyclic di-GMP-binding protein from Oxalobacter formigenes OXCC13
Aligns to 2:160 / 161 (98.8%), covers 100.0% of PF04461, 223.9 bits

YPC_3455 YajQ family cyclic di-GMP-binding protein from Yersinia pestis biovar Medievalis str. Harbin 35
Aligns to 2:162 / 163 (98.8%), covers 100.0% of PF04461, 219.9 bits

HI1034 conserved hypothetical protein (NCBI ptt file) from Haemophilus influenzae Rd KW20
Aligns to 2:162 / 163 (98.8%), covers 100.0% of PF04461, 219.6 bits

YajQ / b0426 nucleotide binding protein from Escherichia coli K-12 substr. MG1655 (see 6 papers)
YAJQ_ECOLI / P0A8E7 UPF0234 protein YajQ from Escherichia coli (strain K12) (see paper)
yajQ / MB|P0A8E7 UPF0234 protein yajQ from Escherichia coli K12 (see 6 papers)
NP_414960 phage Phi6 host factor, ATP/GTP binding protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 2:162 / 163 (98.8%), covers 100.0% of PF04461, 219.5 bits

BCAL2769 hypothetical protein (RefSeq) from Burkholderia cenocepacia J2315
Aligns to 2:160 / 161 (98.8%), covers 100.0% of PF04461, 218.1 bits

Clocel_3875 YajQ family cyclic di-GMP-binding protein from Clostridium cellulovorans 743B
Aligns to 5:163 / 163 (97.5%), covers 99.4% of PF04461, 217.1 bits

R2846_1298 YajQ family cyclic di-GMP-binding protein from Haemophilus influenzae R2846
Aligns to 2:162 / 163 (98.8%), covers 100.0% of PF04461, 216.7 bits

PP1352 conserved hypothetical protein (NCBI ptt file) from Pseudomonas putida KT2440
Aligns to 2:160 / 161 (98.8%), covers 100.0% of PF04461, 212.8 bits

BCK_02545 YajQ family cyclic di-GMP-binding protein from Bacillus cereus FRI-35
Aligns to 5:163 / 163 (97.5%), covers 100.0% of PF04461, 212.1 bits

Rv0566c hypothetical protein (NCBI) from Mycobacterium tuberculosis H37Rv
MT0592 hypothetical protein (NCBI) from Mycobacterium tuberculosis CDC1551
Aligns to 4:163 / 163 (98.2%), covers 100.0% of PF04461, 209.6 bits

MAP4063c hypothetical protein (NCBI) from Mycobacterium avium subsp. paratuberculosis str. k10
Aligns to 4:163 / 163 (98.2%), covers 100.0% of PF04461, 209.1 bits

ACIAD3137 conserved hypothetical protein (NCBI) from Acinetobacter sp. ADP1
Aligns to 2:161 / 162 (98.8%), covers 100.0% of PF04461, 208.2 bits

PA4395 hypothetical protein (NCBI) from Pseudomonas aeruginosa PAO1
Aligns to 2:158 / 159 (98.7%), covers 100.0% of PF04461, 208.0 bits

LPE509_01999 YajQ family cyclic di-GMP-binding protein from Legionella pneumophila subsp. pneumophila LPE509
Aligns to 2:160 / 161 (98.8%), covers 100.0% of PF04461, 207.5 bits

XAC3671 conserved hypothetical protein (NCBI ptt file) from Xanthomonas axonopodis pv. citri str. 306
Aligns to 2:160 / 161 (98.8%), covers 100.0% of PF04461, 206.8 bits

PSPPH_4093 hypothetical protein (NCBI) from Pseudomonas syringae pv. phaseolicola 1448A
Aligns to 2:158 / 159 (98.7%), covers 100.0% of PF04461, 206.1 bits

XOO0711 hypothetical protein (NCBI) from Xanthomonas oryzae pv. oryzae KACC10331
Aligns to 2:160 / 161 (98.8%), covers 100.0% of PF04461, 204.7 bits

XC_3703 hypothetical protein (NCBI) from Xanthomonas campestris pv. campestris str. 8004
NP_638978 nucleotide-binding protein from Xanthomonas campestris pv. campestris str. ATCC 33913
Aligns to 2:160 / 161 (98.8%), covers 100.0% of PF04461, 204.3 bits

EFD32_0973 YajQ family cyclic di-GMP-binding protein from Enterococcus faecalis D32
Aligns to 6:164 / 164 (97.0%), covers 99.4% of PF04461, 199.6 bits

AMK58_18090 YajQ family cyclic di-GMP-binding protein from Azospirillum brasilense
Aligns to 2:161 / 162 (98.8%), covers 100.0% of PF04461, 199.2 bits

Smlt4090 hypothetical protein (RefSeq) from Stenotrophomonas maltophilia K279a
Aligns to 2:159 / 160 (98.8%), covers 100.0% of PF04461, 198.7 bits

SynWH7803_1823 hypothetical protein (RefSeq) from Synechococcus sp. WH 7803
Aligns to 4:164 / 164 (98.2%), covers 99.4% of PF04461, 195.4 bits

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory