PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF04535 (DUF588)

PF04535.12 hits 35 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

CASP5_ARATH / Q9LXF3 Casparian strip membrane protein 5; AtCASP5 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT5G15290 integral membrane family protein (RefSeq) from Arabidopsis thaliana
Aligns to 22:171 / 187 (80.2%), covers 99.3% of PF04535, 163.5 bits

CASP1_LOTJA / P0DKC2 Casparian strip membrane protein 1; LjCASP1 from Lotus japonicus (Lotus corniculatus var. japonicus) (see paper)
Aligns to 22:171 / 186 (80.6%), covers 98.0% of PF04535, 153.9 bits

CASP2_ARATH / Q9CAX3 Casparian strip membrane protein 2; AtCASP2 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT3G11550 integral membrane family protein (RefSeq) from Arabidopsis thaliana
Aligns to 40:189 / 204 (73.5%), covers 99.3% of PF04535, 151.1 bits

CASP4_ARATH / Q9FFZ7 Casparian strip membrane protein 4; AtCASP4 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT5G06200 integral membrane family protein (RefSeq) from Arabidopsis thaliana
NP_196238 Uncharacterized protein family (UPF0497) from Arabidopsis thaliana
Aligns to 38:187 / 202 (74.3%), covers 98.7% of PF04535, 150.9 bits

CASP1_ARATH / Q9SIH4 Casparian strip membrane protein 1; AtCASP1 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
AT2G36100 integral membrane family protein (RefSeq) from Arabidopsis thaliana
Aligns to 42:191 / 206 (72.8%), covers 98.7% of PF04535, 150.1 bits

CSPLP_ARATH / Q8L9B5 CASP-like protein 2B1; AtCASPL2B1 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 5:155 / 182 (83.0%), covers 99.3% of PF04535, 148.2 bits

CSPL2_ARATH / Q9XI72 CASP-like protein 1A1; AtCASPL1A1 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 45:194 / 209 (71.8%), covers 99.3% of PF04535, 143.1 bits

CASP3_ARATH / Q9ZQI2 Casparian strip membrane protein 3; AtCASP3 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT2G27370 integral membrane family protein (RefSeq) from Arabidopsis thaliana
Aligns to 56:205 / 221 (67.9%), covers 98.7% of PF04535, 142.7 bits

CSPLM_ARATH / Q9FE29 CASP-like protein 1D1; AtCASPL1D1 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
NP_567472 integral membrane family protein (RefSeq) from Arabidopsis thaliana
Aligns to 23:176 / 193 (79.8%), covers 99.3% of PF04535, 142.1 bits

CSPLK_ARATH / Q9ZT81 CASP-like protein 1C1; AtCASPL1C1 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 3:143 / 164 (86.0%), covers 97.3% of PF04535, 141.7 bits

CSPL3_ARATH / Q8VZQ3 CASP-like protein 2A1; AtCASPL2A1 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT1G17200 integral membrane family protein (RefSeq) from Arabidopsis thaliana
Aligns to 27:169 / 204 (70.1%), covers 97.3% of PF04535, 139.1 bits

CSPLD_ARATH / Q9SQU2 CASP-like protein 1D2; AtCASPL1D2 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 32:185 / 199 (77.4%), covers 97.3% of PF04535, 138.7 bits

CSPLQ_ARATH / Q9SUP0 CASP-like protein 1B2; AtCASPL1B2 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 12:168 / 197 (79.7%), covers 98.7% of PF04535, 137.1 bits

CSPLO_ARATH / Q8L8Z1 CASP-like protein 1E1; AtCASPL1E1 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
AT4G15630 integral membrane family protein (RefSeq) from Arabidopsis thaliana
Aligns to 21:177 / 190 (82.6%), covers 98.0% of PF04535, 135.9 bits

CSPLN_ARATH / O23413 CASP-like protein 1E2; AtCASPL1E2 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 22:177 / 190 (82.1%), covers 97.3% of PF04535, 129.8 bits

CSPLF_ARATH / Q3EB59 CASP-like protein 3A1; AtCASPL3A1 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 41:196 / 212 (73.6%), covers 98.7% of PF04535, 126.9 bits

GRMZM5G806387 CASP-like protein 2A1 from Zea mays
Aligns to 36:177 / 213 (66.7%), covers 98.7% of PF04535, 126.6 bits

N24_MEDTR / O24088 CASP-like protein N24; CASP-like protein 4A1; MtCASPL4A1; Nodulin 24; MtN24 from Medicago truncatula (Barrel medic) (Medicago tribuloides) (see paper)
Aligns to 61:218 / 234 (67.5%), covers 98.0% of PF04535, 122.6 bits

BLE3_ORYSJ / Q84UT5 CASP-like protein BLE3; CASP-like protein 1C2; OsCASPL1C2; Protein brassinolide-enhanced 3; OsBLE3; Protein BL-enhanced 3 from Oryza sativa subsp. japonica (Rice) (see paper)
XP_015638091 CASP-like protein BLE3 from Oryza sativa Japonica Group
Aligns to 2:142 / 162 (87.0%), covers 97.3% of PF04535, 121.3 bits

Sb09g008190 No description from Sorghum bicolor
Aligns to 2:142 / 162 (87.0%), covers 97.3% of PF04535, 120.3 bits

CSPLR_ARATH / Q9M0L3 CASP-like protein 1F1; AtCASPL1F1 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 14:155 / 170 (83.5%), covers 96.0% of PF04535, 118.3 bits

AT3G55390 integral membrane family protein (RefSeq) from Arabidopsis thaliana
Aligns to 31:168 / 194 (71.1%), covers 97.3% of PF04535, 112.1 bits

CSPLE_ARATH / Q9LUL1 CASP-like protein 2A2; AtCASPL2A2 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT3G14380 integral membrane family protein (RefSeq) from Arabidopsis thaliana
Aligns to 17:172 / 178 (87.6%), covers 98.0% of PF04535, 109.8 bits

LOC110788005 CASP-like protein XL3 from Spinacia oleracea
Aligns to 1:155 / 190 (81.6%), covers 96.7% of PF04535, 109.7 bits

CSPLX_ARATH / Q9FFT2 CASP-like protein 2D1; AtCASPL2D1 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 26:166 / 194 (72.7%), covers 98.0% of PF04535, 109.5 bits

CSPLU_ARATH / Q9LZM5 CASP-like protein 5B1; AtCASPL5B1 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT5G02060 integral membrane protein, putative (RefSeq) from Arabidopsis thaliana
Aligns to 6:139 / 152 (88.2%), covers 99.3% of PF04535, 106.0 bits

CSPLI_ARATH / Q945M8 CASP-like protein 5B2; AtCASPL5B2 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 6:139 / 154 (87.0%), covers 98.0% of PF04535, 103.3 bits

CSPL6_ARATH / Q9SKN3 CASP-like protein 5A2; AtCASPL5A2 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT2G28370 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 34:164 / 179 (73.2%), covers 99.3% of PF04535, 97.7 bits

AT2G38480 integral membrane protein, putative (RefSeq) from Arabidopsis thaliana
Aligns to 41:170 / 188 (69.1%), covers 98.0% of PF04535, 92.1 bits

NP_001237047 uncharacterized protein LOC100527764 from Glycine max
Aligns to 37:167 / 182 (72.0%), covers 98.0% of PF04535, 87.3 bits

CSPLG_ARATH / Q8L7R5 CASP-like protein 5B3; AtCASPL5B3 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 6:137 / 152 (86.8%), covers 98.0% of PF04535, 85.7 bits

CSPL4_ARATH / Q3ECT8 CASP-like protein 5C3; AtCASPL5C3 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 6:136 / 152 (86.2%), covers 98.7% of PF04535, 85.0 bits

PIMP1_CAPAN / A1XGB4 CASP-like protein PIMP1; CASP-like protein 4D1; CaCASPL4D1; Pathogen-induced membrane protein 1; CaPIMP1 from Capsicum annuum (Bell pepper) (see 2 papers)
Aligns to 9:157 / 166 (89.8%), covers 96.0% of PF04535, 83.3 bits

CSPLC_ARATH / Q8GWD5 CASP-like protein 4D1; AtCASPL4D1 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 10:158 / 178 (83.7%), covers 98.0% of PF04535, 79.6 bits

W5FDE6 CASP-like protein from Triticum aestivum
Aligns to 11:163 / 201 (76.1%), covers 97.3% of PF04535, 69.5 bits

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory