PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF04535 (CASP_dom)

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Running HMMer for PF04535

PF04535 hits 61 sequences in PaperBLAST's database above the trusted cutoff. Showing hits to curated sequences only. Or see all hits or try another family.

CASP5_ARATH / Q9LXF3 Casparian strip membrane protein 5; AtCASP5 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 22:171 / 187 (80.2%), covers 99.3% of PF04535, 167.3 bits

CASP1_LOTJA / P0DKC2 Casparian strip membrane protein 1; LjCASP1 from Lotus japonicus (Lotus corniculatus var. japonicus) (see paper)
Aligns to 22:171 / 186 (80.6%), covers 98.0% of PF04535, 157.9 bits

CASP2_ARATH / Q9CAX3 Casparian strip membrane protein 2; AtCASP2 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 40:189 / 204 (73.5%), covers 99.3% of PF04535, 156.8 bits

CASP4_ARATH / Q9FFZ7 Casparian strip membrane protein 4; AtCASP4 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 38:187 / 202 (74.3%), covers 98.7% of PF04535, 155.7 bits

CASP1_ARATH / Q9SIH4 Casparian strip membrane protein 1; AtCASP1 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
Aligns to 42:191 / 206 (72.8%), covers 98.7% of PF04535, 155.2 bits

CSPLP_ARATH / Q8L9B5 CASP-like protein 2B1; AtCASPL2B1 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 5:155 / 182 (83.0%), covers 99.3% of PF04535, 154.2 bits

CASP3_ARATH / Q9ZQI2 Casparian strip membrane protein 3; AtCASP3 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 56:205 / 221 (67.9%), covers 98.7% of PF04535, 148.5 bits

CSPL2_ARATH / Q9XI72 CASP-like protein 1A1; AtCASPL1A1 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 45:194 / 209 (71.8%), covers 99.3% of PF04535, 146.7 bits

CSPL3_ARATH / Q8VZQ3 CASP-like protein 2A1; AtCASPL2A1 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 27:169 / 204 (70.1%), covers 98.0% of PF04535, 142.1 bits

CSPLK_ARATH / Q9ZT81 CASP-like protein 1C1; AtCASPL1C1 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 3:143 / 164 (86.0%), covers 97.4% of PF04535, 142.1 bits

CSPLM_ARATH / Q9FE29 CASP-like protein 1D1; AtCASPL1D1 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 23:176 / 193 (79.8%), covers 99.3% of PF04535, 141.3 bits

CSPLD_ARATH / Q9SQU2 CASP-like protein 1D2; AtCASPL1D2 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 32:185 / 199 (77.4%), covers 98.0% of PF04535, 137.6 bits

CSPLQ_ARATH / Q9SUP0 CASP-like protein 1B2; AtCASPL1B2 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 12:168 / 197 (79.7%), covers 98.0% of PF04535, 136.0 bits

CSPLO_ARATH / Q8L8Z1 CASP-like protein 1E1; AtCASPL1E1 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
Aligns to 21:177 / 190 (82.6%), covers 98.0% of PF04535, 133.2 bits

CSPLF_ARATH / Q3EB59 CASP-like protein 3A1; AtCASPL3A1 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 41:196 / 212 (73.6%), covers 98.7% of PF04535, 130.1 bits

CSPLN_ARATH / O23413 CASP-like protein 1E2; AtCASPL1E2 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 22:177 / 190 (82.1%), covers 97.4% of PF04535, 127.2 bits

BLE3_ORYSJ / Q84UT5 CASP-like protein BLE3; CASP-like protein 1C2; OsCASPL1C2; Protein brassinolide-enhanced 3; OsBLE3; Protein BL-enhanced 3 from Oryza sativa subsp. japonica (Rice) (see paper)
Aligns to 2:142 / 162 (87.0%), covers 97.4% of PF04535, 123.6 bits

CSPLR_ARATH / Q9M0L3 CASP-like protein 1F1; AtCASPL1F1 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 13:155 / 170 (84.1%), covers 96.0% of PF04535, 121.6 bits

CSPLX_ARATH / Q9FFT2 CASP-like protein 2D1; AtCASPL2D1 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 26:166 / 194 (72.7%), covers 98.7% of PF04535, 114.7 bits

CSPLE_ARATH / Q9LUL1 CASP-like protein 2A2; AtCASPL2A2 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 17:171 / 178 (87.1%), covers 98.0% of PF04535, 114.5 bits

CSPLU_ARATH / Q9LZM5 CASP-like protein 5B1; AtCASPL5B1 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 6:139 / 152 (88.2%), covers 99.3% of PF04535, 111.5 bits

CSPLI_ARATH / Q945M8 CASP-like protein 5B2; AtCASPL5B2 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 6:139 / 154 (87.0%), covers 98.0% of PF04535, 109.3 bits

N24_MEDTR / O24088 CASP-like protein N24; CASP-like protein 4A1; MtCASPL4A1; Nodulin 24; MtN24 from Medicago truncatula (Barrel medic) (Medicago tribuloides) (see paper)
Aligns to 61:218 / 234 (67.5%), covers 96.7% of PF04535, 105.3 bits

CSPL6_ARATH / Q9SKN3 CASP-like protein 5A2; AtCASPL5A2 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 34:164 / 179 (73.2%), covers 99.3% of PF04535, 104.6 bits

CSPL4_ARATH / Q3ECT8 CASP-like protein 5C3; AtCASPL5C3 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 6:136 / 152 (86.2%), covers 98.7% of PF04535, 92.6 bits

CSPLG_ARATH / Q8L7R5 CASP-like protein 5B3; AtCASPL5B3 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 6:137 / 152 (86.8%), covers 98.7% of PF04535, 91.2 bits

PIMP1_CAPAN / A1XGB4 CASP-like protein PIMP1; CASP-like protein 4D1; CaCASPL4D1; Pathogen-induced membrane protein 1; CaPIMP1 from Capsicum annuum (Capsicum pepper) (see 2 papers)
Aligns to 9:150 / 166 (85.5%), covers 96.0% of PF04535, 88.2 bits

CSPLC_ARATH / Q8GWD5 CASP-like protein 4D1; AtCASPL4D1 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 10:158 / 178 (83.7%), covers 97.4% of PF04535, 80.9 bits

Or search for genetic data about PF04535 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory