PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF05018 (CFA20_dom)

PaperBLAST, GapMind, SitesBLAST, and Sites on a Tree will be down for server maintenance on Friday March 29.

Running HMMer for PF05018

PF05018 hits 25 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

CFA20_BOVIN / Q6B857 Cilia- and flagella-associated protein 20 from Bos taurus (Bovine) (see 2 papers)
CFA20_MOUSE / Q8BTU1 Cilia- and flagella-associated protein 20; Gene trap locus 3 protein from Mus musculus (Mouse) (see 2 papers)
F6R525 Cilia- and flagella-associated protein 20 from Monodelphis domestica
Aligns to 1:185 / 193 (95.9%), covers 99.5% of PF05018, 320.0 bits

Q5ZHP3 Cilia- and flagella-associated protein 20 from Gallus gallus
Aligns to 1:185 / 193 (95.9%), covers 99.5% of PF05018, 319.7 bits

CFA20_DANRE / Q6PBJ2 Cilia- and flagella-associated protein 20 from Danio rerio (Zebrafish) (Brachydanio rerio) (see paper)
Aligns to 1:185 / 192 (96.4%), covers 99.5% of PF05018, 319.0 bits

Q6GL74 Cilia- and flagella-associated protein 20 from Xenopus tropicalis
Aligns to 1:185 / 193 (95.9%), covers 99.5% of PF05018, 319.0 bits

CFA20_HUMAN / Q9Y6A4 Cilia- and flagella-associated protein 20; Basal body up-regulated protein 22; Transcription factor IIB from Homo sapiens (Human) (see 2 papers)
Aligns to 1:185 / 193 (95.9%), covers 99.5% of PF05018, 318.5 bits

CFA20_DROME / Q9VKV8 Cilia- and flagella-associated protein 20; Basal body up-regulated protein 22 from Drosophila melanogaster (Fruit fly) (see paper)
Aligns to 1:185 / 199 (93.0%), covers 99.5% of PF05018, 317.8 bits

CFA20_PARTE / A0CDD4 Cilia- and flagella-associated protein 20; Bug22p from Paramecium tetraurelia (see paper)
Aligns to 1:185 / 191 (96.9%), covers 99.5% of PF05018, 313.6 bits

CFA20_CHLRE / A8IU92 Cilia- and flagella-associated protein 20; Basal body up-regulated protein 22; Bug22p; Flagellar-associated protein 20 from Chlamydomonas reinhardtii (Chlamydomonas smithii) (see 3 papers)
XP_001692489 uncharacterized protein from Chlamydomonas reinhardtii
Aligns to 1:185 / 190 (97.4%), covers 99.5% of PF05018, 313.1 bits

Q22NU3 Cilia- and flagella-associated protein 20 from Tetrahymena thermophila (strain SB210)
TTHERM_00418580 transcription factor iib protein, putative from Tetrahymena thermophila SB210
Aligns to 1:185 / 195 (94.9%), covers 99.5% of PF05018, 307.1 bits

Q86D25 Cilia- and flagella-associated protein 20 from Caenorhabditis elegans
Aligns to 1:185 / 203 (91.1%), covers 99.5% of PF05018, 304.4 bits

Q38C25 Cilia- and flagella-associated protein 20 from Trypanosoma brucei brucei (strain 927/4 GUTat10.1)
Aligns to 1:185 / 294 (62.9%), covers 99.5% of PF05018, 302.5 bits

AT3G12300 hypothetical protein from Arabidopsis thaliana
Aligns to 1:185 / 190 (97.4%), covers 99.5% of PF05018, 302.4 bits

CG17118 uncharacterized protein from Drosophila melanogaster
Aligns to 1:185 / 281 (65.8%), covers 99.5% of PF05018, 278.9 bits

LOC101457260 cilia- and flagella-associated protein 20 from Ceratitis capitata
Aligns to 1:185 / 237 (78.1%), covers 99.5% of PF05018, 276.2 bits

Q499T7 Cilia- and flagella-associated protein 20 from Rattus norvegicus
Aligns to 1:152 / 164 (92.7%), covers 78.4% of PF05018, 241.7 bits

PF3D7_0508400 conserved protein, unknown function from Plasmodium falciparum 3D7
Aligns to 1:185 / 366 (50.5%), covers 99.5% of PF05018, 234.4 bits

POC16_CHLRE / A8JAN3 Centriole proteome protein 16 from Chlamydomonas reinhardtii (Chlamydomonas smithii) (see paper)
XP_001699039 uncharacterized protein from Chlamydomonas reinhardtii
Aligns to 2:187 / 2083 (8.9%), covers 97.8% of PF05018, 155.6 bits

A0A091D425 CFA20 domain-containing protein from Fukomys damarensis
Aligns to 26:207 / 686 (26.5%), covers 87.6% of PF05018, 144.1 bits

A0DK60 Chromosome undetermined scaffold_54, whole genome shotgun sequence from Paramecium tetraurelia
Aligns to 1:194 / 1821 (10.7%), covers 96.8% of PF05018, 135.9 bits

WDR90_HUMAN / Q96KV7 WD repeat-containing protein 90 from Homo sapiens (Human) (see paper)
NP_660337 WD repeat-containing protein 90 from Homo sapiens
Aligns to 1:189 / 1748 (10.8%), covers 92.4% of PF05018, 117.5 bits

H7BX49 WD repeat domain 90 from Mus musculus
2 alignments in 59:272 / 1892 (10.0%), covering up to 65.9% of PF05018, 117.2 bits

XP_047289700 WD repeat-containing protein 90 isoform X24 from Homo sapiens
Aligns to 10:200 / 1755 (10.9%), covers 91.9% of PF05018, 116.6 bits

F1RA29 WD repeat domain 90 from Danio rerio
XP_003201394 WD repeat-containing protein 90 from Danio rerio
2 alignments in 1:206 / 1843 (11.2%), covering up to 64.9% of PF05018, 115.4 bits

L8J612 WD repeat-containing protein 90 (Fragment) from Bos mutus
Aligns to 1:189 / 1739 (10.9%), covers 91.4% of PF05018, 113.4 bits

XP_011531758 protein CFAP20DC isoform X5 from Homo sapiens
Q6ZVT6 Protein CFAP20DC from Homo sapiens
Aligns to 1:60 / 689 (8.7%), covers 24.3% of PF05018, 33.2 bits

Or search for genetic data about PF05018 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory