PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF05142 (DUF702)

PF05142.12 hits 11 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

SRS1_ARATH / Q9SD40 Protein SHI RELATED SEQUENCE 1; Protein STYLISH 1 from Arabidopsis thaliana (Mouse-ear cress) (see 7 papers)
AT3G51060 STY1 (STYLISH 1); protein heterodimerization/ transcription factor (RefSeq) from Arabidopsis thaliana
NP_190675 Lateral root primordium (LRP) protein-like protein from Arabidopsis thaliana
Aligns to 140:287 / 370 (40.0%), covers 98.0% of PF05142, 216.7 bits

SHI_ARATH / Q9XGX0 Protein SHORT INTERNODES from Arabidopsis thaliana (Mouse-ear cress) (see 3 papers)
AT5G66350 SHI (SHORT INTERNODES); protein binding / protein heterodimerization/ transcription factor (RefSeq) from Arabidopsis thaliana
Aligns to 116:263 / 331 (44.7%), covers 98.7% of PF05142, 216.1 bits

NP_001330898 Lateral root primordium (LRP) protein-like protein from Arabidopsis thaliana
Aligns to 116:263 / 331 (44.7%), covers 98.7% of PF05142, 216.1 bits

SRS7_ARATH / Q9FXH7 Protein SHI RELATED SEQUENCE 7 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
NP_001031069 SHI-related sequence 7 from Arabidopsis thaliana
AT1G19790 SRS7 (SHI-RELATED SEQUENCE 7) (RefSeq) from Arabidopsis thaliana
Aligns to 115:272 / 345 (45.8%), covers 98.7% of PF05142, 215.0 bits

SRS5_ARATH / Q9LQZ5 Protein SHI RELATED SEQUENCE 5 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT1G75520 SRS5 (SHI-RELATED SEQUENCE 5) (RefSeq) from Arabidopsis thaliana
Aligns to 121:285 / 346 (47.7%), covers 98.7% of PF05142, 211.3 bits

SRS2_ARATH / O65517 Protein SHI RELATED SEQUENCE 2; Protein STYLISH 2 from Arabidopsis thaliana (Mouse-ear cress) (see 4 papers)
AT4G36260 STY2 (STYLISH 2); transcription factor (RefSeq) from Arabidopsis thaliana
Aligns to 90:247 / 322 (49.1%), covers 98.7% of PF05142, 208.0 bits

LRP1_ARATH / Q94CK9 Protein LATERAL ROOT PRIMORDIUM 1 from Arabidopsis thaliana (Mouse-ear cress) (see 3 papers)
AT5G12330 LRP1 (LATERAL ROOT PRIMORDIUM 1); protein homodimerization (RefSeq) from Arabidopsis thaliana
Aligns to 108:272 / 320 (51.6%), covers 98.7% of PF05142, 198.5 bits

SRS4_ARATH / Q9SI19 Protein SHI RELATED SEQUENCE 4 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
AT2G18120 SRS4 (SHI-RELATED SEQUENCE 4) (RefSeq) from Arabidopsis thaliana
Aligns to 68:207 / 222 (63.1%), covers 98.7% of PF05142, 190.7 bits

SRS3_ARATH / Q9SJT8 Protein SHI RELATED SEQUENCE 3 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT2G21400 SRS3 (SHI-RELATED SEQUENCE3) (RefSeq) from Arabidopsis thaliana
2 alignments in 5:126 / 174 (70.1%), covering up to 38.0% of PF05142, 168.7 bits

AT3G54430 SRS6 (SHI-RELATED SEQUENCE 6) (RefSeq) from Arabidopsis thaliana
Aligns to 37:173 / 183 (74.9%), covers 98.7% of PF05142, 142.4 bits

AT5G33210 SRS8 (SHI-RELATED SEQUENCE 8) (RefSeq) from Arabidopsis thaliana
Aligns to 48:158 / 173 (64.2%), covers 56.7% of PF05142, 112.0 bits

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory