Family Search for PF05542 (DUF760)

April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.

PF05542 hits 11 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

AT2G14910 hypothetical protein from Arabidopsis thaliana
2 alignments in 80:373 / 386 (51.6%), covering up to 100.0% of PF05542, 171.5 bits

• Proteomics, phylogenetics, and coexpression analyses indicate novel interactions in the plastid CLP chaperone-protease system
  Rei, The Journal of biological chemistry 2022
  • “...AT1G63610; DUF760-7 - AT5G14970; EXE1 - AT4G33630; EXE2 - AT1G27510; DUF760-6 - AT3G17800; DUF760-4 - AT2G14910; DUF760 to 2 - AT1G48450; HUGZ-1- AT5G24060; HUGZ-2- AT3G49140. Data availability The MS data have been deposited to the PRIDE Archive ( http://www.ebi.ac.uk/pride/archive/ ) via the PRIDE partner repository and...”

AT5G14970 hypothetical protein from Arabidopsis thaliana
2 alignments in 79:352 / 355 (52.1%), covering up to 98.8% of PF05542, 162.1 bits

• Proteomics, phylogenetics, and coexpression analyses indicate novel interactions in the plastid CLP chaperone-protease system
  Rei, The Journal of biological chemistry 2022
  • “...AT3G19780; DUF179-3 - AT3G29240; DUF3143 - AT5G52960; DUF760-1 - AT1G32160; DUF760-3 - AT1G63610; DUF760-7 - AT5G14970; EXE1 - AT4G33630; EXE2 - AT1G27510; DUF760-6 - AT3G17800; DUF760-4 - AT2G14910; DUF760 to 2 - AT1G48450; HUGZ-1- AT5G24060; HUGZ-2- AT3G49140. Data availability The MS data have been deposited to...”

GRMZM2G044900 uncharacterized protein LOC100383346 from Zea mays
2 alignments in 69:373 / 390 (51.5%), covering up to 100.0% of PF05542, 161.8 bits

• The dynamics of DNA methylation in maize roots under Pb stress
  Ding, International journal of molecular sciences 2014
  • “...Unknown GRMZM2G026442 0 0.13 1.47 Serine-threonine/tyrosine-protein kinase catalytic domain GRMZM2G066485 0.47 0.61 0.55 SANT/Myb domain GRMZM2G044900 0.24 0.33 10,000 Lipase, GDSL AC188195.2_FG004 0.35 0.35 0.39 Basic-leucine zipper domain GRMZM2G302405 0.14 0.23 7.01 GRAM GRMZM2G095323 2.11 2.2 3 Unknown GRMZM2G444567 10,000 10,000 10,000 K Homology domain, type...”

AT1G63610 hypothetical protein from Arabidopsis thaliana
2 alignments in 88:325 / 340 (49.1%), covering up to 98.8% of PF05542, 153.6 bits

• Proteomics, phylogenetics, and coexpression analyses indicate novel interactions in the plastid CLP chaperone-protease system
  Rei, The Journal of biological chemistry 2022
  • “...AT1G33780; DUF179-2 - AT3G19780; DUF179-3 - AT3G29240; DUF3143 - AT5G52960; DUF760-1 - AT1G32160; DUF760-3 - AT1G63610; DUF760-7 - AT5G14970; EXE1 - AT4G33630; EXE2 - AT1G27510; DUF760-6 - AT3G17800; DUF760-4 - AT2G14910; DUF760 to 2 - AT1G48450; HUGZ-1- AT5G24060; HUGZ-2- AT3G49140. Data availability The MS data have...”
• Ectopic RING zinc finger gene from hot pepper induces totally different genes in lettuce and tobacco
  Kesawat, Molecular breeding : new strategies in plant improvement 2018
  • “...4.25 At1g43195 Uncharacterized gene 0 0 0 4.21 At2g22122 Uncharacterized gene 0 0 0 4.47 At1g63610 Uncharacterized gene 0 0 0 4.38 b. Genes down-regulated in CaRZFP1 -overexpressing T 4 generation lettuce plants At2g47850 Zinc finger CCCH domain-containing protein 32 0.90 0.54 0.43 3.62 At4g10300 RmlC-like...”

slr1674 hypothetical protein from Synechocystis sp. PCC 6803
Aligns to 22:104 / 116 (71.6%), covers 98.8% of PF05542, 115.0 bits

• Sll1252 Coordinates Electron Transport between Plastoquinone and Cytochrome b₆/f Complex in Synechocystis PCC 6803
  Balaga, Genes 2023
  • “...1.3 0.4 18.7 5.5 slr1544 1.1 0.1 17.8 1.7 I slr1704 1.3 0.1 11.9 0.2 slr1674 1.1 0.1 8.3 0.6 I sll0528 1.1 0.1 7.6 0.2 I sll1483, periplasmic protein 1.1 0.0 7.2 0.7 I I sll1652 1.2 0.1 6.6 3.6 sll0306, sigB , rpoD ,...”
• Environmental Regulation of PndbA600, an Auto-Inducible Promoter for Two-Stage Industrial Biotechnology in Cyanobacteria
  Madsen, Frontiers in bioengineering and biotechnology 2020
  • “...Hypothetical protein Hypothetical sll1769 Hypothetical protein Hypothetical sll1158 Hypothetical protein Hypothetical sll1884 Hypothetical protein Hypothetical slr1674 Hypothetical protein Hypothetical slr0959 Hypothetical protein Hypothetical slr0292 Hypothetical protein Hypothetical sll6052 Hypothetical protein Hypothetical sll6053 Hypothetical protein Hypothetical sll6054 Hypothetical protein Hypothetical sll6055 Hypothetical protein Hypothetical slr1498 hypD Putative...”
• The role of transcriptional repressor activity of LexA in salt-stress responses of the cyanobacterium Synechocystis sp. PCC 6803
  Takashima, Scientific reports 2020
  • “...promoter region with the divergently transcribed ggpS glpD . The co-induction of gghA glpK spoU slr1674 hypA1 by disruption of lexA (Fig. 1 A) suggests polycistronic expression of these five genes. The third and fourth gene clusters are ggtBCD ( slr0529 0531 ) and ggpP ggtA...”
• Universal Molecular Triggers of Stress Responses in Cyanobacterium Synechocystis
  Mironov, Life (Basel, Switzerland) 2019
  • “...+ + + slr0095 smtA SmtA S -adenosyl methionine methyltransferase + + + + + slr1674 slr1674 Slr1674 Thermoprotector protein of PS II + + + + + + + slr1963 ocpA OCP Orange carotenoid-binding protein + + + + + slr1512 sbtA SbtA Na-dependent bicarnonate...”
• RNA-seq Profiling Reveals Novel Target Genes of LexA in the Cyanobacterium Synechocystis sp. PCC 6803
  Kizawa, Frontiers in microbiology 2016
  • “...sll1085 ), ggpP-ggtA ( slr0746 - 0747 ), and slr1670 - glpK - spoU - slr1674 - hypA1 ( slr1670 - 1675 ) in S.6803 genome (Mikkat and Hagemann, 2000 ; Klhn et al., 2010 ). RNA-seq analysis revealed that expression levels of these gene clusters...”
  • “...region of the two divergently transcribed operons, ggpS-glpD and slr1670 - glpK - spoU - slr1674 - hypA1 , both of which are highly induced in lexA . His-LexA bound to the promoter fragment of each operon (for the ggpS operon from nucleotide 1949371 to 1949186...”
• The ω subunit of RNA polymerase is essential for thermal acclimation of the cyanobacterium Synechocystis sp. PCC 6803
  Gunnelius, PloS one 2014
  • “...proteins have been suggested to affect heat responses. The clpB1 gene encoding a protease, and slr1674 (a hypothetical protein) have shown to affect rapid heat responses, whereas hik34 (encoding a histidine kinase) and hypA1 (encoding a hydrogenase formation protein) affect sustained thermotolerance of PSII, and cpcC2...”
• Identification of components associated with thermal acclimation of photosystem II in Synechocystis sp. PCC6803
  Rowland, PloS one 2010
  • “...PSII thermotolerance was affected by mutations in clpB1 , cpcC2 , hspA , htpG and slr1674 . Final PSII thermotolerance was affected by mutations in cpcC2 , hik34 , hspA and hypA1 , suggesting that these gene products play roles in long-term thermal acclimation of PSII....”
  • “...38.47 6.13 15.04 9.65 34.87 16.86 clpB1 15.70 0.75 27.66 3.20 10.79 2.70 17.33 3.75 slr1674 18.55 1.57 16.78 0.43 15.57 6.34 14.21 8.13 groEL-1 4.42 0.48 6.26 2.15 3.65 0.81 7.39 2.96 sigB 6.50 0.15 6.50 0.01 4.73 1.41 6.44 2.68 htpG 18.84 1.38 16.26...”
• DNA microarray analysis of redox-responsive genes in the genome of the cyanobacterium Synechocystis sp. strain PCC 6803
  Hihara, Journal of bacteriology 2003
  • “...slr1291, ndhD2 slr1413 slr1544 slr1603 slr1641, clpB1 slr1674 slr1675, hypA1 slr1738 slr1963, water-soluble carotenoid protein slr2075, groES slr2076, groEL...”
• More

PMM0605 conserved hypothetical protein from Prochlorococcus marinus sp. MED4
Aligns to 19:101 / 112 (74.1%), covers 100.0% of PF05542, 108.5 bits

• A framework for the computational prediction and analysis of non-coding RNAs in microbial environmental populations and their experimental validation
  Lott, The ISME journal 2020
  • “...PMM0072 sufC Fe-S cluster assembly ATPase Transport and binding proteins 0.001447766 5.32535 726 732 tx50_rs03220 PMM0605 DUF760 domain-containing protein Hypothetical 0.001670637 8.43848 7 17 tx50_rs02615 PMM0485 Hypothetical 0.001817716 7.53348 75 90 tx50_rs05485 PMM1943 Hypothetical 0.002320793 7.11648 2 10 tx50_rs01665 PMM0320 minE cell division topological specificity factor...”

sync_1524 hypothetical protein from Synechococcus sp. CC9311
Aligns to 22:104 / 120 (69.2%), covers 100.0% of PF05542, 103.3 bits

• Selection in coastal Synechococcus (cyanobacteria) populations evaluated from environmental metagenomes
  Tai, PloS one 2011
  • “...genes involved in transport, secretion, or motility functions that were well represented in the metagenome. Sync_1524, a possible porin gene, sync_2281, a large-conductance mechanosensitive channel, and sync_2588, the gene for a possible ABC transporter ATP-binding component all had elevated dN/dS at their N-termini ( Figures 6A,...”

UVB31_ARATH / Q9LVJ0 UV-B-induced protein At3g17800, chloroplastic from Arabidopsis thaliana (Mouse-ear cress) (see 3 papers)
AT3G17800 hypothetical protein from Arabidopsis thaliana
Aligns to 149:274 / 421 (29.9%), covers 98.8% of PF05542, 97.6 bits

• Integrate QTL Mapping and Transcription Profiles Reveal Candidate Genes Regulating Flowering Time in Brassica napus
  Liu, Frontiers in plant science 2022
  • “...Nefissi et al., 2011 ; Wu et al., 2021 ). BnaA06T0363000ZS , an ortholog of At3G17800 that encodes a UV-B-induced protein with an unknown function, was significantly downregulated in two varieties of rapeseed during low-temperature vernalization. BnaC08G0010400ZS encodes a hypothetical protein that is a homolog of...”
  • “...annotations. Candidate Gene Regulation Pfam_annnotation Description BnaA06G0363000ZS Down Protein of unknown function (DUF760) UV-B-induced protein At3g17800, chloroplastic [Brassica rapa] BnaA06G0437200ZS Down Myb-like DNA-binding domain transcription activator GLK2-like [Brassica napus] BnaA06G0332400ZS Up hypothetical protein Flowering-promoting factor 1 OS = Sinapis alba GN = FPF1 PE = 2...”
• Genome-wide Association Study for Yield and Yield-Related Traits in Diverse Blackgram Panel (Vigna mungo L. Hepper) Reveals Novel Putative Alleles for Future Breeding Programs
  Singh, Frontiers in genetics 2022
  • “...close to Q. YpP.8 . For harvest index, gene LOC106758323 (-174.544kb) coding for UV-B-induced protein At3g17800, chloroplastic isoform X1 was related to Q. HI.1 . The gene LOC106760579 (-189.197kb) was found in the proximity of Q. HI.5 coding cytochrome P450 CYP72A219-like enzyme. The gene LOC106769438 with...”
  • “...et al., 2018 ) were previously known for yield improvement. For harvest index, UV-B-induced protein At3g17800 in basil ( Dou et al., 2019 ), cytochrome P450 CYP72A219-like enzyme in Arabidopsis ( Bak et al., 2011 ), root UV-B sensitive in wheat ( Agrawal et al., 2004...”
• Proteomics, phylogenetics, and coexpression analyses indicate novel interactions in the plastid CLP chaperone-protease system
  Rei, The Journal of biological chemistry 2022
  • “...AT1G32160; DUF760-3 - AT1G63610; DUF760-7 - AT5G14970; EXE1 - AT4G33630; EXE2 - AT1G27510; DUF760-6 - AT3G17800; DUF760-4 - AT2G14910; DUF760 to 2 - AT1G48450; HUGZ-1- AT5G24060; HUGZ-2- AT3G49140. Data availability The MS data have been deposited to the PRIDE Archive ( http://www.ebi.ac.uk/pride/archive/ ) via the PRIDE...”
• Utilization of Transcriptome, Small RNA, and Degradome Sequencing to Provide Insights Into Drought Stress and Rewatering Treatment in Medicago ruthenica
  Shi, Frontiers in plant science 2021
  • “...truncatula ) mtr-MIR2118-p5 TRINITY_DN24512_c1_g1 Putative fructose-bisphosphate aldolase ( Medicago truncatula ) mtr-MIR5230-p3_1ss3AG TRINITY_DN14908_c0_g1 UV-B-induced protein At3g17800, chloroplastic-like ( Medicago truncatula ) mtr-MIR5230-p3_1ss3AG TRINITY_DN17507_c0_g1 NAD(P)H-quinone oxidoreductase subunit O, chloroplastic ( Medicago truncatula ) mtr-MIR5230-p3_1ss3AG TRINITY_DN20655_c0_g1 Delta (8)-fatty-acid desaturase 2 ( Medicago truncatula ) mtr-MIR5230-p3_1ss3AG TRINITY_DN24927_c0_g2 Heat shock...”
  • “...gma-MIR1527-p3_1ss4CT TRINITY_DN23107_c0_g2 GDP- L -galactose phosphorylase 1 ( Medicago truncatula ) gma-miR159a-3p_1ss21AT TRINITY_DN20806_c0_g1 UV-B-induced protein At3g17800, chloroplastic ( Medicago truncatula ) gma-miR171j-5p TRINITY_DN16578_c0_g1 Uncharacterized protein LOC25496852 ( Medicago truncatula ) gma-miR171j-5p TRINITY_DN23921_c0_g1 Fasciclin-like arabinogalactan protein 15 ( Medicago truncatula ) mtr-MIR2606a-p5_1 TRINITY_DN15846_c0_g1 Protein FAR1-RELATED SEQUENCE 5-like...”
• Transcriptomic analysis reveals unique molecular factors for lipid hydrolysis, secondary cell-walls and oxidative protection associated with thermotolerance in perennial grass
  Xu, BMC genomics 2018
  • “...Uncharacterized protein At1g32220, chloroplastic 1.11 GO:0006979 biological_process response to oxidative stress 1 TRINITY_DN114953_c0_g1 UV-B-induced protein At3g17800, chloroplastic 1.22 GO:0042744 biological_process hydrogen peroxide catabolic process 3 TRINITY_DN98249_c0_g3 Thioredoxin F 1.22 TRINITY_DN100788_c0_g1 Glyoxylate/succinic semialdehyde reductase 1 1.34 TRINITY_DN115073_c1_g1 Cryptochrome-1 1.36 TRINITY_DN97981_c0_g1 Phospholipid hydroperoxide glutathione peroxidase 1 1.40 TRINITY_DN94618_c1_g1...”
• The rose (Rosa hybrida) NAC transcription factor 3 gene, RhNAC3, involved in ABA signaling pathway both in rose and Arabidopsis
  Jiang, PloS one 2014
  • “...266017_at unknown protein At2g18690 3.53 0.008 265276_at unknown protein At2g28400 3.05 0.011 258188_at unknown protein At3g17800 2.57 0.021 258275_at unknown protein At3g15760 2.47 0.031 266259_at unknown protein At2g27830 2.19 0.009 252057_at unknown protein At3g52480 2.04 0.03 Genes derived from the RhNAC3 up-regulated genes identified by the...”
• Reduced expression of the genes encoding chloroplast-localized proteins in a cold-resistant bri1 (brassinosteroid-insensitive 1) mutant
  Kim, Plant signaling & behavior 2010 (secret)
• The relationship of drought-related gene expression in Arabidopsis thaliana to hormonal and environmental factors
  Huang, Journal of experimental botany 2008
  • “...finger (AN1-like) family protein At3g60420 Expressed protein At1g19380 Expressed protein At5g20230 Plastocyanin-like domain-containing protein [(ATBCB)] At3g17800 Expressed protein At3g47420 Glycerol-3-phosphate transporter, putative/glycerol 3-phosphate permease, putative At5g54940 Eukaryotic translation initiation factor SUI1, putative At5g42050 Expressed protein At5g16830 Syntaxin 21 (SYP21)/PEP12 homologue [(SYP21)] At5g22000 Zinc finger (C3HC4-type RING...”
• More

AT1G48450 hypothetical protein from Arabidopsis thaliana
Aligns to 140:266 / 423 (30.0%), covers 98.8% of PF05542, 92.9 bits

• Proteomics, phylogenetics, and coexpression analyses indicate novel interactions in the plastid CLP chaperone-protease system
  Rei, The Journal of biological chemistry 2022
  • “...- AT4G33630; EXE2 - AT1G27510; DUF760-6 - AT3G17800; DUF760-4 - AT2G14910; DUF760 to 2 - AT1G48450; HUGZ-1- AT5G24060; HUGZ-2- AT3G49140. Data availability The MS data have been deposited to the PRIDE Archive ( http://www.ebi.ac.uk/pride/archive/ ) via the PRIDE partner repository and are available with the dataset...”
• Genome-Wide Identification of U-To-C RNA Editing Events for Nuclear Genes in Arabidopsis thaliana
  Ruchika,, Cells 2021
  • “...AT2G37585 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 55 7191297 249 171 AT2G16586 Unknown 56 17908527 0 2 AT1G48450 Protein of unknown function (DUF760) cells-10-00635-t002_Table 2 Table 2 List of genes identified with U-to-C RNA editing sites in 12-day- and 20-day-old Arabidopsis seedlings. S.No. Position Edited Site Gene ID...”

AT5G48590 hypothetical protein from Arabidopsis thaliana
2 alignments in 112:325 / 344 (59.6%), covering up to 100.0% of PF05542, 88.9 bits

• The circadian clock and defence signalling in plants
  Sharma, Molecular plant pathology 2015 (secret)
• Reactive oxygen species and transcript analysis upon excess light treatment in wild-type Arabidopsis thaliana vs a photosensitive mutant lacking zeaxanthin and lutein
  Alboresi, BMC plant biology 2011
  • “...(TPPA) -1,13 248402_at AT5G52100 dihydrodipicolinate reductase family protein -1,13 256728_at AT3G25660 glutamyl-tRNA(Gln) amidotransferase -1,12 248663_at AT5G48590 expressed protein -1,12 245984_at AT5G13090 expressed protein -1,12 250663_at AT5G07110 prenylated rab acceptor (PRA1) -1,11 254011_at AT4G26370 antitermination NusB domain -1,10 261439_at AT1G28395 expressed protein -1,10 259889_at AT1G76405 expressed protein...”

AT1G32160 hypothetical protein from Arabidopsis thaliana
Aligns to 130:257 / 406 (31.5%), covers 88.0% of PF05542, 81.1 bits

• Proteomics, phylogenetics, and coexpression analyses indicate novel interactions in the plastid CLP chaperone-protease system
  Rei, The Journal of biological chemistry 2022
  • “...AT1G23180; DUF179-1 - AT1G33780; DUF179-2 - AT3G19780; DUF179-3 - AT3G29240; DUF3143 - AT5G52960; DUF760-1 - AT1G32160; DUF760-3 - AT1G63610; DUF760-7 - AT5G14970; EXE1 - AT4G33630; EXE2 - AT1G27510; DUF760-6 - AT3G17800; DUF760-4 - AT2G14910; DUF760 to 2 - AT1G48450; HUGZ-1- AT5G24060; HUGZ-2- AT3G49140. Data availability The...”

Or search for genetic data about PF05542 in the Fitness Browser