Family Search for PF05553 (DUF761)
April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.
PF05553 hits 35 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
AT5G47920 hypothetical protein from Arabidopsis thaliana
Aligns to 150:185 / 187 (19.3%), covers 100.0% of PF05553, 62.1 bits
AT5G54300 hypothetical protein from Arabidopsis thaliana
Aligns to 287:322 / 326 (11.0%), covers 97.2% of PF05553, 61.0 bits
- Constructing Networks of Organelle Functional Modules in Arabidopsis
Penga, Current genomics 2016 - “...AT5G43150 AT3G50260 AT3G28340 AT2G26530 AT2G35710 AT5G26920 AT3G50760 AT1G66090 AT1G21790 AT3G46110 AT1G29330 AT1G72520 AT1G50740 AT1G77450 AT5G67210 AT5G54300 AT5G06320 AT1G73805 AT2G23810 AT5G63790 AT5G10695 AT5G63790 AT5G06320 AT3G48090 AT3G06500 AT2G17040 AT4G19120 AT5G56980 AT4G01950 AT2G22080 AT5G47910 AT4G23810 AT1G02390 AT1G76650 AT1G43910 AT1G27770 AT4G36500 AT2G46510 AT3G25600 AT1G61890 AT3G55840 AT5G59550 AT5G37770 AT5G66210 AT1G74430 AT2G20370...”
- GhCFE1A, a dynamic linker between the ER network and actin cytoskeleton, plays an important role in cotton fibre cell initiation and elongation
Lv, Journal of experimental botany 2015 - “...XP_002316932.1 (POPTRDRA FT_771875), NP_176321.2 (At1g61260); NP_200241.1 (At5g54300), KF018237 (CFE1A A1), KF018238 (CFE1D D5), KF018239 (CFE1A TM-1), KF018240...”
- “...and POPTRDRAFT_771875), and Arabidopsis thaliana (At1g61260 and At5g54300). Accession numbers are listed in the Materials and methods. (B) Phylogenetic analysis...”
- Arabidopsis extra large G-protein 2 (XLG2) interacts with the Gbeta subunit of heterotrimeric G protein and functions in disease resistance
Zhu, Molecular plant 2009 - “...1.35 247492_at At5g61890 unknown 0.48 1.50 * 248205_at At5g54300 unknown 0.50 1.10 246573_at At1g31680 copper amine oxidase-like 2.39 0.59 * 266590_at At2g46240...”
AT2G26110 hypothetical protein from Arabidopsis thaliana
Aligns to 270:305 / 309 (11.7%), covers 97.2% of PF05553, 60.9 bits
A70_ARATH / F4K956 Pathogen-associated molecular patterns-induced protein A70; PIG A70 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT5G56980 hypothetical protein from Arabidopsis thaliana
Aligns to 343:377 / 379 (9.2%), covers 94.4% of PF05553, 60.6 bits
- Candidate Domestication-Related Genes Revealed by Expression Quantitative Trait Loci Mapping of Narrow-Leafed Lupin (Lupinus angustifolius L.)
Plewiński, International journal of molecular sciences 2019 - “...Lup011836 (OIW03199.1), and Lup002110 (OIW20134.1) sequences. Lup011781 has been identified as a homolog of MHM17-10 (AT5G56980) gene. It is pathogen-associated molecular pattern-induced gene with unknown function, putatively participating in jasmonic acid pathway [ 78 ]. Lup011739 encodes a homolog of GALACTURONOSYLTRANSFERASE-LIKE 10 , which is involved...”
- “...NLL-10 51.4 18.4 53.5 0.71 galacturonosyltransferase 10-like, GAUT10 OIW03144.1 NLL-10 51.3 16.7 45.2 0.62 MHM17-10, AT5G56980 OIW03199.1 NLL-10 48.4 16.4 50.5 0.69 general transcription factor IIH subunit 2, GTF2H2 OIW03193.1 NLL-10 50.3 10.6 31.5 0.53 pentatricopeptide repeat-containing protein OIW20134.1 NLL-10 49.7 9.7 28.9 0.52 UDP-Glycosyltransferase 85A2,...”
- Constructing Networks of Organelle Functional Modules in Arabidopsis
Penga, Current genomics 2016 - “...AT1G50740 AT1G77450 AT5G67210 AT5G54300 AT5G06320 AT1G73805 AT2G23810 AT5G63790 AT5G10695 AT5G63790 AT5G06320 AT3G48090 AT3G06500 AT2G17040 AT4G19120 AT5G56980 AT4G01950 AT2G22080 AT5G47910 AT4G23810 AT1G02390 AT1G76650 AT1G43910 AT1G27770 AT4G36500 AT2G46510 AT3G25600 AT1G61890 AT3G55840 AT5G59550 AT5G37770 AT5G66210 AT1G74430 AT2G20370 AT3G08720 AT4G30280 AT3G15210 AT1G05170 AT4G18880 AT3G16720 AT4G23810 AT5G52750 AT4G14365 AT5G62020 AT4G35110...”
- RARGE II: an integrated phenotype database of Arabidopsis mutant traits using a controlled vocabulary
Akiyama, Plant & cell physiology 2014 - “...provide examples of AT1G21600, which is a subunit in the plastid-encoded RNA polymerase complex, and AT5G56980, which is related to the jasmonic acid signaling pathway. Arabidopsis Database Gene function Mutant line Ontology Phenotype Introduction Arabidopsis thaliana is one of the most commonly used experimental plants, and...”
- “...genes and does not have known protein functions, including interaction, localization and enzyme activity. The AT5G56980 gene was found to encode an unknown protein that is disrupted and induced in the lines GT4800 and F21325, which were obtained as a loss-of-function line and a gain-of-function line,...”
- Generalist insects behave in a jasmonate-dependent manner on their host plants, leaving induced areas quickly and staying longer on distant parts
Perkins, Proceedings. Biological sciences 2013 - “...control of an early jasmonate-responsive promoter gene A70 (At5g56980) [35]. A bioluminescent LUC signal appeared around the feeding site in the elicited leaf...”
- “...control of an early JA-responsive promoter gene A70 (At5g56980) [35] were constructed as follows: Promega pGL4-11 was digested with Fse1, ends were polished...”
- Arabidopsis systemic immunity uses conserved defense signaling pathways and is mediated by jasmonates
Truman, Proceedings of the National Academy of Sciences of the United States of America 2007 - “...A70 depends on RPM1 recognition. RNA blots of A70 (At5g56980) accumulation 4 hpi in local or systemic tissues after virulent (D) or avirulent (avrRpm1) (R) P....”
- “...DC3000(avrRpm1) isolate. We identified one PIG, A70 (At5g56980), rapidly induced in systemic tissue after challenge with DC3000(avrRpm1) but not the compatible...”
LOC106389377 pathogen-associated molecular patterns-induced protein A70-like from Brassica napus
Aligns to 339:373 / 375 (9.3%), covers 94.4% of PF05553, 60.3 bits
LOC116212884 uncharacterized protein LOC116212884 from Punica granatum
Aligns to 319:354 / 357 (10.1%), covers 100.0% of PF05553, 58.4 bits
- Transcriptional profiling of long non-coding RNAs regulating fruit cracking in Punica granatum L. under bagging
Wang, Frontiers in plant science 2022 - “...and DEGs. Among them, XR_004158164.1 co-regulated with ten DEGs (LOC116201766, LOC116202352, LOC116198068, LOC116202713, LOC116213464, LOC116212471, LOC116212884, LOC116206401, LOC116211848 and LOC116200280) involved in ethylene-activated signaling pathway, lignin catabolic process, lipid transport/binding, cutin biosynthetic process and cell wall. XR_004156395.1 co-regulated with six DEGs (LOC116214125, LOC116208411, LOC116212683, LOC116210477, LOC116207007...”
A0A3Q7F690 DUF4408 domain-containing protein from Solanum lycopersicum
Aligns to 271:306 / 308 (11.7%), covers 97.2% of PF05553, 57.7 bits
AT5G38700 hypothetical protein from Arabidopsis thaliana
Aligns to 146:179 / 182 (18.7%), covers 86.1% of PF05553, 57.3 bits
- Global nucleosome positioning regulates salicylic acid mediated transcription in Arabidopsis thaliana
Singh, BMC plant biology 2015 - “...genes for each class (total six classes; i.e. SI-ND genes AT1G28480, AT1G80590, AT3G56400; SR-ND genes AT5G38700, AT4G37800, AT5G13220; SI-NI genes AT1G05700, AT1G09380, AT1G68450; SR-NI genes AT4G21850, AT1G66100, AT4G34410; CON genes AT5G02380, AT5G02500, AT5G60390 and SIL genes AT1G27380, AT4G23780, AT3G26130). For the internal control set, five exonic...”
- Accession-specific modifiers act with ZWILLE/ARGONAUTE10 to maintain shoot meristem stem cells during embryogenesis in Arabidopsis
Tucker, BMC genomics 2013 - “...0.017 FHE5 AT5G36910 249645_at THIONIN 2.2 16.5 0.002 AT5G38580 249517_at F-box family protein -3.2 0.014 AT5G38700 249522_at unknown protein 3.2 0.011 AT5G38960 249479_at germin-like protein, putative 6.2 0.003 AT5G39060 258246_s_at transposable element gene 17.0 0.000 AT5G39100 249495_at GERMIN-LIKE PROTEIN 6 -3.8 0.042 AT5G39210 249472_at CRR7 4.8...”
Q676U0 Disease resistance protein from Pinus sylvestris
Aligns to 169:204 / 207 (17.4%), covers 94.4% of PF05553, 57.0 bits
AT4G26130 hypothetical protein from Arabidopsis thaliana
Aligns to 250:284 / 286 (12.2%), covers 94.4% of PF05553, 55.1 bits
- The Circadian Clock Gene Circuit Controls Protein and Phosphoprotein Rhythms in Arabidopsis thaliana
Krahmer, Molecular & cellular proteomics : MCP 2022 - “...24 AT2G07360 TASH3 2769, 5085 9464, 8286 YQSTYEGYGSPIREEPPPPYSYSEPQSR 10 1.1E-02 2.6E-02 4.9E-02 3.7E-01 24 36 AT4G26130 unknown pr. 5416, 7652, 1518 7456 TTSIGDGGEEGVDDKASNFINK(FK) 3 1.4E-02 2.6E-02 5.3E-02 3.7E-01 24 40 AT1G44800 nodulin MtN21 7377 34568 SQELPITNVVK 1 4.4E-06 2.6E-02 6.5E-04 3.7E-01 28 52 AT2G46920 POL 7848...”
- Identifying Early Warning Signals for the Sudden Transition from Mild to Severe Tobacco Etch Disease by Dynamical Network Biomarkers
Tarazona, Viruses 2019 - “..., LAP1 ), At3g02630 ( ACYL ACYL CARRIER PROTEIN (ACP) DESATURASE 5 , AAD5 ), At4g26130 (hypothetical protein described as a cotton fiber protein), At5g2107 (hypothetical protein described as a Fe 3+ di-citrate transport system permease), and At5g43940 ( ALCOHOL DEHYDROGENASE 2 ( ADH2 ), PARAQUAT...”
AT4G16790 hydroxyproline-rich glycoprotein family protein from Arabidopsis thaliana
Aligns to 434:468 / 473 (7.4%), covers 86.1% of PF05553, 54.2 bits
- Transcriptomic profiling of linolenic acid-responsive genes in ROS signaling from RNA-seq data in Arabidopsis
Mata-Pérez, Frontiers in plant science 2015 - “...of NADH dehydrogenase complex I and cytochrome oxidase complex III ( AT2G07785, AT2G07689, ATMG00650, ATMG00285, AT4G16790, ATMG01360, ATMG00513, ATCG00890, ATCG01250, ATMG00580, ATMG00990, ATCG01090, ATMG00510, ATCG01080, ATCG01070, ATCG01100, ATCG01050, AT2G07751 , and ATCG01010 ). It has been reported that most photosynthesis-related genes are down-regulated after herbivore attack...”
- Conservation of microstructure between a sequenced region of the genome of rice and multiple segments of the genome of Arabidopsis thaliana
Mayer, Genome research 2001 - “...W AT4g17486 (2.7e-44) C; AT5g47310 (1.1e-50) W AT4g16790 (5.5e-7) C; AT3g60380 (4.4e-9) C AT3g44940 (1.7e-36) C; AT4g16750 (1.3e-31) C AT4g17340 (6.7e-97)...”
LOC105048415 uncharacterized protein LOC105048415 from Elaeis guineensis
Aligns to 130:165 / 167 (21.6%), covers 94.4% of PF05553, 53.5 bits
AT1G61260 hypothetical protein from Arabidopsis thaliana
Aligns to 307:342 / 344 (10.5%), covers 100.0% of PF05553, 53.0 bits
- GhCFE1A, a dynamic linker between the ER network and actin cytoskeleton, plays an important role in cotton fibre cell initiation and elongation
Lv, Journal of experimental botany 2015 - “...(POPTRDRAFT_811252), XP_002316932.1 (POPTRDRA FT_771875), NP_176321.2 (At1g61260); NP_200241.1 (At5g54300), KF018237 (CFE1A A1), KF018238 (CFE1D D5), KF018239...”
- “...POPTRDRAFT_811252, and POPTRDRAFT_771875), and Arabidopsis thaliana (At1g61260 and At5g54300). Accession numbers are listed in the Materials and methods....”
AT4G02170 hypothetical protein from Arabidopsis thaliana
Aligns to 133:166 / 171 (19.9%), covers 83.3% of PF05553, 52.0 bits
AT5G06790 hypothetical protein from Arabidopsis thaliana
Aligns to 172:207 / 209 (17.2%), covers 97.2% of PF05553, 50.4 bits
- Exposure to Sound Vibrations Lead to Transcriptomic, Proteomic and Hormonal Changes in Arabidopsis
Ghosh, Scientific reports 2016 - “...even a single gene that was commonly down-regulated at P <0.05. Two genes (At4g19430 and At5g06790) were commonly down-regulated by 500, 1000 and 3000Hz treatments. Three genes (At4g16447, At1g48330 and At2g21210) were down-regulated by 500, 2000, 3000Hz. Treatment with 500Hz shared maximum number of differentially expressed...”
- “...in this group. Among them At2g20670 was highly induced by all SV treatments whereas At4g19430, At5g06790, At1g48330 and At4g16447 were down-regulated. Seven mechanostimulus responsive genes are also categorized in this group ( Fig. 2 ). Notably, many of the aforementioned genes discussed under different groups are...”
AT4G14380 hypothetical protein from Arabidopsis thaliana
Aligns to 163:198 / 200 (18.0%), covers 94.4% of PF05553, 47.2 bits
- misMM: An Integrated Pipeline for Misassembly Detection Using Genotyping-by-Sequencing and Its Validation with BAC End Library Sequences and Gene Synteny
Ko, Genomics & informatics 2017 - “...Bra033489 A01 11,455,026 11,470,735 AT4G14350 Chr4 8,256,086 8,260,787 Included in MCB Bra033487 A04 4,917,814 4,918,407 AT4G14380 Chr4 8,285,766 8,286,772 Included in ADB Bra033486 A04 4,915,949 4,917,119 AT4G14385 Chr4 8,286,986 8,288,800 Included in ADB Bra033483 A04 4,882,642 4,883,358 AT4G14440 Chr4 8,306,745 8,307,753 Included in ADB Bra033482 A04...”
- Genome-wide SNP identification and QTL mapping for black rot resistance in cabbage
Lee, BMC plant biology 2015 - “...A01: 25,091,903 - 25,095,843 C01: 14,884,502 - 16,579,946 BRQTL-C1_2 Bo1g057060/070 Bra039560 A01: 11,678,267 - 11,687,802 AT4G14380 C01: 18,227,386 37,119,290 Bo1g086130 Bra013691 A01: 7,172,559 - 7,175,366 AT4G23440 Bo1g087610 Bra038144 Scaffold000140 AT1G57850 Bo1g091560 Bo1g094680/710 a Bra031456/455 a A01: 17,128,737 17,140,522 AT1G61100/105 a Bo1g103860 BRQTL-C3 Bo3g060060/070/080/100/110/130/140 a Bra001160/161/162 a...”
AT4G04990 hypothetical protein from Arabidopsis thaliana
Aligns to 264:295 / 303 (10.6%), covers 86.1% of PF05553, 46.2 bits
- Combined Approach of GWAS and Phylogenetic Analyses to Identify New Candidate Genes That Participate in Arabidopsis thaliana Primary Root Development Using Cellular Measurements and Primary Root Length
López-Ruiz, Plants (Basel, Switzerland) 2022 - “...sequence variability between contrasting accessions. NAC3 and NAC048 were chosen for the PR length analysis, AT4G04990 a Serine/arginine repetitive matrix-like protein (DUF761), AT3G18900 a Ternary complex factor MIP1 leucine-zipper protein and AT3G43970, a hypothetical protein for the EZ length, growth rate and meristem length, respectively. To...”
- “...Thus, we analyzed the nucleotide substitution patterns of NAC3 (AT3G29035), Serine/arginine repetitive matrix-like protein DUF761 (AT4G04990), hypothetical protein (AT3G43970), Ternary complex factor MIP1 leucine-zipper protein (AT3G18900), NAC048 (AT3G04420) and FAD2 (AT3G12120) sequences and included their geographic origin into additional phylogenetic trees to investigate if the accessions...”
- Agrobacterium VirE2 Protein Modulates Plant Gene Expression and Mediates Transformation From Its Location Outside the Nucleus
Lapham, Frontiers in plant science 2021 - “...abundant protein-like Up (2.4) Up (1.8) At3g61400 1-aminocyclopropane-1-carboxylate oxidase homolog 8 Down (9.7) Down (2.7) At4g04990 Serine/arginine repetitive matrix-like protein (DUF761) Up (2.1) Up (2.4) At4g19690 Fe(2+) transport protein 1 Down (2.5)-3 h; Down (2.8)-12 h Down (2.3)-3 h At4g26200 1-aminocyclopropane-1-carboxylate synthase 7 Up (4.8) Up...”
- Arabidopsis thaliana transcription factors bZIP19 and bZIP23 regulate the adaptation to zinc deficiency
Assunção, Proceedings of the National Academy of Sciences of the United States of America 2010 - “...similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G61260.1) AT4G04990 Up-regulated LAC2 (laccase 2) AT2G29130 ANR1; DNA binding / transcription factor...”
AT5G57510 hypothetical protein from Arabidopsis thaliana
Aligns to 87:123 / 130 (28.5%), covers 88.9% of PF05553, 45.6 bits
- Genome-Wide Association Study to Identify Possible Candidate Genes of Snap Bean Leaf and Pod Color
Celebioglu, Genes 2023 - “...10 53 Pv5-593.03G142100 AT5G57490 T/C H.2019 36,757,348 38.52 0.10 39.62 20.8 4.04 10 35 Pv5-593.03G142300 AT5G57510 T/C H.2 year 36,757,348 43.30 0.10 36.47 13.6 6.63 10 40 Pv5-593.03G142400 AT1G51680 Pv5-593.03G142500 Pv5-593.03G142800 Pv5-593.03G142900 AT5G57560 Pv5-593.03G143000 AT5G57560 Chr: Chromosome, MAF: Minor allele frequency, PVE: Phenotypic variance explained, H...”
- Transcriptomic and Metabolomic Analysis of a Pseudomonas-Resistant versus a Susceptible Arabidopsis Accession
Orf, International journal of molecular sciences 2022 - “...0.800 AT5G39050 I 0.168 0.613 0.472 0.551 0.919 1.364 0.808 0.598 0.581 0.255 0.576 0.674 AT5G57510 II 0.984 0.034 0.666 0.159 0.914 3.287 1.357 0.702 0.672 0.654 1.405 2.171 CEN2 II 0.228 0.843 1.387 0.228 2.256 2.978 0.562 1.072 0.688 0.771 1.000 1.479 COBL5 I 0.023...”
- Agrobacterium VirE2 Protein Modulates Plant Gene Expression and Mediates Transformation From Its Location Outside the Nucleus
Lapham, Frontiers in plant science 2021 - “...elicited protein Up (4.7) Up (21.4) At5g57010 IQ domain-containing protein IQM5 Up (5.4) Up (1.6) At5g57510 Cotton fiber protein Up (4.4) Up (2.4) At5g59820 Zinc finger protein ZAT12 Up (2.0) Up (1.3) At5g64810 Probable WRKY transcription factor 51 Up (3.0) Up (1.7) FIGURE 3 Gene Ontology...”
- Functional characterization of drought-responsive modules and genes in Oryza sativa: a network-based approach
Sircar, Frontiers in genetics 2015 - “...WRKY71, CACTFTPPCA1 LOC_Os02g37180 Maize: GRMZM2G083855 (metal binding protein) ABRE, MYB, WRKY71, CACTFTPPCA1 LOC_Os08g34800 Arabidopsis : AT5G57510 Response to chitin ABRE, MYB, WRKY71, CACTFTPPCA1 LOC_Os12g05690 Arabidopsis : AT3G10120 Protein modification process, biosynthetic process ABRE, MYB, WRKY71, CACTFTPPCA1 LOC_Os02g53410 Maize: GRMZM2G139293 (conserved gene, unknown function) ABRE, MYB, WRKY71,...”
- Transcriptome analysis of Gossypium hirsutum flower buds infested by cotton boll weevil (Anthonomus grandis) larvae
Artico, BMC genomics 2014 - “...0.01 contig17371 CCR4 Serine/threonine-protein kinase-like domain AT5g47850 3.51 0 contig2100 MAPK3 Encodes a mitogen-activated kinase AT5g57510 4.27 8.61E-07 contig2102 MAPK3 Encodes a mitogen-activated kinase AT3g45640 2.17 2.57E-10 contig14909 MKK9 Member of MAP Kinase Kinase family AT1g73500 2.22 1.58E-10 contig7892 MAPKKK14 Member of MEKK subfamily AT2g30040 2.96...”
LOC103951864 LOW QUALITY PROTEIN: pathogen-associated molecular patterns-induced protein A70 from Pyrus x bretschneideri
Aligns to 276:307 / 307 (10.4%), covers 80.6% of PF05553, 45.4 bits
- Transcriptomics analysis of field-droughted pear (Pyrus spp.) reveals potential drought stress genes and metabolic pathways
Yang, PeerJ 2022 - “...histidine-containing phosphotransfer protein 4, gene 16914 encoding protein NIM1-INTERACTING 1, and gene12366 encoding uncharacterized protein LOC103951864 ( Table 3 ). Genes that were highly expressed in irrigated samples but identified in drought samples included gene 27148 encoding GDL79_ARATH GDSL esterase/lipase At5g33370, gene 5286 encoding uncharacterized protein...”
- “...bretschneideri] gene 12366 2.59 3.46 6.12 9.01 4.27 0.14 0.22 0.7 0.24 0.32 uncharacterized protein LOC103951864 [Pyrus x bretschneideri] gene 1490 0.52 1.22 1.03 2.73 2.14 0.33 0 0.05 0.16 0.11 WRK40_ARATH Probable WRKY transcription factor 40 OS=Arabidopsis thaliana GN=WRKY40 PE=1 SV=1 WRKY transcription factor 18...”
LOC105115473 uncharacterized protein LOC105115473 from Populus euphratica
Aligns to 165:200 / 202 (17.8%), covers 88.9% of PF05553, 43.3 bits
- Transcriptome analysis of trembling aspen (Populus tremuloides) under nickel stress
Czajka, PloS one 2022 - “...0.0205 Chaperone protein DnaJ 38 Potrs040177g25403 0.00 0.00 9.97 15.87 17.04 -9.03 0.0205 uncharacterized protein LOC105115473 39 Potrs007984g11196 0.00 0.00 7.02 7.41 29.68 -9.17 0.0231 Peptidyl-prolyl cis-trans 40 Potrs003791g29788 0.00 0.00 3.57 1.59 5.28 -9.30 0.0206 Phosphomethylpyrimidine synthase, chloroplastic 41 RNASeq.44057 0.12 0.00 86.30 28.90 157.76...”
- “...-9.17 0.0231 Peptidyl-prolyl cis-trans 13 Potrs040177g25403 0.00 0.00 9.97 15.87 17.04 -9.03 0.0205 uncharacterized protein LOC105115473 14 Potrs006408g09027 0.00 0.00 25.59 25.82 28.22 -9.02 0.0205 Chaperone protein DnaJ 15 RNASeq.41747 0.00 0.00 37.07 47.26 50.81 -9.01 0.0205 16 RNASeq.7567 0.00 0.00 15.24 51.49 51.02 -8.99 0.0216...”
AT3G60380 hypothetical protein from Arabidopsis thaliana
Aligns to 700:728 / 743 (3.9%), covers 72.2% of PF05553, 40.2 bits
LOC101293711 uncharacterized protein LOC101293711 from Fragaria vesca subsp. vesca
Aligns to 182:211 / 219 (13.7%), covers 75.0% of PF05553, 39.6 bits
- Disease Resistance Genetics and Genomics in Octoploid Strawberry
Barbey, G3 (Bethesda, Md.) 2019 - “...dawn Description augustus_masked-fvb1-2-processed-gene-27.2 cis 89817565 0.43 0.0418 30.4% 36.6 113.3 32.2 21.3 34.3 uncharacterized protein LOC101293711 augustus_masked-fvb1-4-processed-gene-7.11 cis 166502627 0.16 0.0150 43.4% 2.3 0.6 4.0 3.8 1.6 PLT5_ARATH Sugar-proton symporter PLT5 augustus_masked-fvb2-4-processed-gene-105.5 cis 166503861 0.29 0.0114 80.9% 0.0 0.0 2.8 1.8 1.3 TMVRN_NICGU TMV resistance N...”
LOC109766650 uncharacterized protein LOC109766650 from Aegilops tauschii subsp. strangulata
Aligns to 210:243 / 249 (13.7%), covers 80.6% of PF05553, 38.5 bits
AT5G13880 hypothetical protein from Arabidopsis thaliana
Aligns to 151:179 / 188 (15.4%), covers 77.8% of PF05553, 37.6 bits
AT5G61710 hypothetical protein from Arabidopsis thaliana
Aligns to 117:149 / 155 (21.3%), covers 86.1% of PF05553, 37.2 bits
- Genome-wide (ChIP-seq) identification of target genes regulated by WRKY33 during submergence stress in Arabidopsis
Zhang, BMC genomic data 2021 - “...Zinc finger protein 8.5 AT5G37960 GroES-like family protein 5.4 AT5G40690 histone-lysine N-methyltransferase trithorax-like protein 6.1 AT5G61710 cotton fiber protein 5.3 The genes listed in this table are limited to those associated with peaks that were enriched greater than 5-fold and have been classified with a known...”
- The Arabidopsis ABA-activated kinase OST1 phosphorylates the bZIP transcription factor ABF3 and creates a 14-3-3 binding site involved in its turnover
Sirichandra, PloS one 2010 - “...1,8 At4g40020 Unknown protein LVRRKSLSFS 9,20E-08 13 6,4 At2g31560 Unknown protein LTRAKSLTDD 1,00E-06 14 8,1 At5g61710 Unknown protein LRRRRTSNTR 1,70E-06 21 12 At4g26950 Unknown protein LRRSRSSSSS 2,70E-06 24 13 At3g12870 Unknown protein LRRAKSLRVE 2,00E-06 24 13 At2g43340 Unknown protein LKRTKSLTDD 2,20E-06 29 17 At4g19970 Unknown protein...”
- Pollen development and fertilization in Arabidopsis is dependent on the MALE GAMETOGENESIS IMPAIRED ANTHERS gene encoding a type V P-type ATPase
Jakobsen, Genes & development 2005 - “...At1g68610 At1g01460 At2g35210 At1g44160 At3g09530 At5g61710 At4g15980 At3g03800 At4g00350 At3g04630 At1g52240 At1g61290 At2g47340 At1g79860 At1g75870 At4g04980...”
AT1G72790 hydroxyproline-rich glycoprotein family protein from Arabidopsis thaliana
Aligns to 507:537 / 561 (5.5%), covers 77.8% of PF05553, 34.9 bits
- Suppression of ASKβ (AtSK32), a Clade III Arabidopsis GSK3, Leads to the Pollen Defect during Late Pollen Development
Dong, Molecules and cells 2015 - “...phosphorylated at the potential priming sites: PEP carboxykinase PCK1, RanBP domain-containing protein, thioredoxin-regulated beta-amylase TR-BAMY, At1g72790, remorin family protein, At4g11270, nodulin family protein, RabGAP/TBC domain-containing protein AtGYPC1b, glycine-rich protein and At3g01160 ( de la Fuente van Bentem et al., 2008 ). All ASKs in clade II,...”
LOC7495227 uncharacterized protein LOC7495227 from Populus trichocarpa
Aligns to 172:196 / 196 (12.8%), covers 61.1% of PF05553, 34.6 bits
- Integrative analysis of metabolome, proteome, and transcriptome for identifying genes influencing total lignin content in Populus trichocarpa
Zhao, Frontiers in plant science 2023 - “...\ Potri.016G017200 UGT71B1 0.946 0.546 ( Jiang, 2022 ) Potri.008G017700 Potri.008G017700 0.875 0.540 \ Potri.014G123500 LOC7495227 0.833 0.533 \ Potri.013G101100 ERF021 0.819 0.528 ( Zeng etal., 2020 ) Potri.T149600 CAD1 0.922 0.523 ( Chao etal., 2022 ; Lee etal., 2022 ) Potri.003G167400 SAUR1 0.900 0.522 (...”
- “...as a resistance protein ( Cortaga etal., 2022 ). However, genes LOC7486095 , LOC7479833 , LOC7495227 , and Potri.008G017700 have not been previously reported in relation to lignin. Therefore, we can infer that the monolignol genes PtrC3H3 , PtrC4H1 , and PtrC4H2 , which belong to...”
AT4G29110 hypothetical protein from Arabidopsis thaliana
Aligns to 162:186 / 200 (12.5%), covers 58.3% of PF05553, 32.6 bits
- The Histone Deacetylase Inhibitor Suberoylanilide Hydroxamic Acid Alleviates Salinity Stress in Cassava
Patanun, Frontiers in plant science 2016 - “...receptor-like cytoplasmic kinase 2 4.438 1.88E-06 RknMes02_051803 AT3G09270 Glutathione S-transferase TAU 8 4.369 1.29E-05 RknMes02_037654 AT4G29110 Unknown protein 4.337 7.18E-06 RknMes02_051464 AT3G06240 F-box family protein 4.284 2.95E-06 RknMes02_053782 AT4G17380 MUTS-like protein 4 4.231 1.34E-05 RknMes02_049288 AT5G52060 BCL-2-associated athanogene 1 4.218 2.22E-05 RknMes02_000416 AT2G26870 Non-specific phospholipase C2...”
- “...3.199 1.34E-06 RknMes02_044414 3.137 2.80E-05 RknMes02_054888 AT1G01690 Putative recombination initiation defects 3 3.128 5.59E-06 RknMes02_037654 AT4G29110 Unknown protein 2.989 7.18E-06 RknMes02_055397 AT2G26140 FTSH protease 4 2.940 7.16E-06 RknMes02_052664 AT5G64310 Arabinogalactan protein 1 2.918 4.99E-05 RknMes02_001499 AT5G54160 O-methyltransferase 1 2.918 8.90E-05 RknMes02_012269 AT1G06460 Alpha-crystallin domain 32.1 2.841...”
LOC101762337 uncharacterized protein LOC101762337 from Setaria italica
Aligns to 174:195 / 204 (10.8%), covers 55.6% of PF05553, 28.4 bits
AT4G32860 hypothetical protein from Arabidopsis thaliana
Aligns to 171:197 / 199 (13.6%), covers 55.6% of PF05553, 27.4 bits
LOC101510669 uncharacterized protein LOC101510669 from Cicer arietinum
Aligns to 217:253 / 253 (14.6%), covers 58.3% of PF05553, 26.4 bits
- Overexpression of Chickpea Defensin Gene Confers Tolerance to Water-Deficit Stress in Arabidopsis thaliana
Kumar, Frontiers in plant science 2019 - “...2.60722 101501038 Ca3 uncharacterized LOC101501038 protein-coding 95 LOC101508795 1.99777 101508795 Ca6 uncharacterized LOC101508795 protein-coding 96 LOC101510669 2.23982 101510669 Ca8 uncharacterized LOC101510669 protein-coding 97 LOC101511932 2.82384 101511932 Ca2 uncharacterized LOC101511932 protein-coding 98 LOC101512423 3.25588 101512423 Ca5 uncharacterized LOC101512423 protein-coding 99 LOC101515113 1.63132 101515113 Ca4 uncharacterized LOC101515113 protein-coding...”
LOC8075318 uncharacterized protein LOC8075318 from Sorghum bicolor
Aligns to 217:240 / 245 (9.8%), covers 50.0% of PF05553, 25.7 bits
AT1G52140 hypothetical protein from Arabidopsis thaliana
Aligns to 180:205 / 208 (12.5%), covers 61.1% of PF05553, 25.3 bits
- Single-cell transcriptome sequencing atlas of cassava tuberous root
Song, Frontiers in plant science 2022 - “...Supplemental Figures1A, B ). The Manes_01G055100 (Avr9/Cf-9 rapidly elicited protein) is homologous to marker gene AT1G52140 (Avr9/Cf-9 rapidly elicited protein) of Arabidopsis phloem ( Wendrich etal., 2020 ), is highly expressed in cluster 5 ( Figure1B ). By pseudotime analysis we found that cluster 5, in...”
- RNA sequencing of Populus x canadensis roots identifies key molecular mechanisms underlying physiological adaption to excess zinc
Ariani, PloS one 2015 - “...4,68 0 POPTR_0018s03780 NA flowering promoting factor 1 ATFPF1 1,91 1,22 0,01 POPTR_0018s08240 NA protein AT1G52140 2,1 1,74 0 POPTR_0018s13070 NA ein3-binding f-box protein 1-like EBF1 1,72 0,98 0,01 POPTR_0018s14270 NA trans-cinnamate 4-monooxygenase NA 2,02 2,74 0 POPTR_0018s14280 NA superkiller viralicidic activity 2-like 2-like HEN2 1,89...”
- Hyperosmotic priming of Arabidopsis seedlings establishes a long-term somatic memory accompanied by specific changes of the epigenome
Sani, Genome biology 2013 - “...36); hydrolase Down 200 400 Down AT1G52070 Jacalin lectin family protein Down 200 200 Down AT1G52140 Unknown protein Down 1,800 200 Down AT1G52410 TSA1; calcium ion binding/protein binding Down 800 200 Down AT1G56650 PAP1; transcription factor Down 600 200 Down AT1G57830 Toll-Interleukin-Resistance (TIR) domain Down 400...”
LOC107874801 uncharacterized protein LOC107874801 from Capsicum annuum
Aligns to 166:186 / 191 (11.0%), covers 55.6% of PF05553, 25.2 bits
- Fine mapping of a thrips resistance QTL in Capsicum and the role of diterpene glycosides in the underlying mechanism
van, TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2021 - “...an acid phosphatase 1 (APS1), an organic cation/carnitine transporter 7 (OCT7) and an uncharacterized locus LOC107874801, are the most likely candidates for playing a role in thrips resistance and are a first step in elucidating the genetic basis of thrips resistance in Capsicum . In addition,...”
- “...7-like 24.8124.82 Mbp LOC107876110 Organic cation/carnitine transporter 7-like 24.8324.84 Mbp LOC107874800 Uncharacterized LOC107874800 24.9524.95 Mbp LOC107874801 Uncharacterized LOC107874801 24.9624.96 Mbp TRNAK-CUU Transfer RNA lysine (anticodon CUU) 24.9724.97 Mbp LOC107873994 F-box/LRR-repeat protein At3g59250-like 25.0125.01 Mbp LOC107873995 Uncharacterized LOC107873995 25.0625.07 Mbp LOC107876111 Uncharacterized LOC107876111 The gene list is...”
LOC123162191 uncharacterized protein LOC123162191 from Triticum aestivum
Aligns to 175:198 / 198 (12.1%), covers 63.9% of PF05553, 23.1 bits
- Computational genomics insights into cold acclimation in wheat
Pan, Frontiers in genetics 2022 - “...factor MYB20 TraesCS4B03G0828000 uncharacterized protein LOC123093546 isoform X1 TraesCS5D03G0225200 uncharacterized protein LOC123124437 TraesCS7B03G0888400 uncharacterized protein LOC123162191 TraesCS7D03G0109900 uncharacterized protein LOC123168984 TraesCS2A03G0862400 Zinc finger, RING/FYVE/PHD-type domain containing protein TraesCS2A03G1086200 TraesCS3D03G0047400 TraesCS4D03G0738600 TraesCS5A03G0028100 TraesCS5A03G0564900 TraesCS5A03G1156200 FIGURE 2 Distinction of genes associated with cold acclimation from the others. (A)...”
Or search for genetic data about PF05553 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory