PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF05728 (UPF0227)

PF05728.12 hits 18 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YzzI / b3031 esterase YqiA from Escherichia coli K-12 substr. MG1655 (see 4 papers)
YQIA_ECOLI / P0A8Z7 Esterase YqiA; EC 3.1.-.- from Escherichia coli (strain K12) (see paper)
P0A8Z7 3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17) from Escherichia coli (see paper)
Aligns to 3:189 / 193 (96.9%), covers 98.9% of PF05728, 249.7 bits

YcfP / b1108 UPF0227 protein YcfP from Escherichia coli K-12 substr. MG1655 (see 3 papers)
SF1112 hypothetical protein (NCBI) from Shigella flexneri 2a str. 301
b1108 orf, hypothetical protein (VIMSS) from Escherichia coli str. K-12 substr. MG1655
S1192 hypothetical protein (NCBI ptt file) from Shigella flexneri 2a str. 2457T
Aligns to 1:178 / 180 (98.9%), covers 99.5% of PF05728, 241.4 bits

t1710 conserved hypothetical protein (NCBI ptt file) from Salmonella enterica subsp. enterica serovar Typhi Ty2
Aligns to 1:178 / 180 (98.9%), covers 99.5% of PF05728, 240.6 bits

ESA_00377 hypothetical protein (RefSeq) from Enterobacter sakazakii ATCC BAA-894
ESA_00377 esterase YqiA from Cronobacter sakazakii ATCC BAA-894
Aligns to 3:189 / 191 (97.9%), covers 98.9% of PF05728, 240.4 bits

Pf6N2E2_3637 yqiA-like hydrolase, affects the cell envelope from Pseudomonas fluorescens FW300-N2E2
Aligns to 4:188 / 202 (91.6%), covers 99.5% of PF05728, 209.1 bits

Psest_0482 yqiA-like hydrolase, affects the cell envelope from Pseudomonas stutzeri RCH2
Aligns to 7:191 / 201 (92.0%), covers 99.5% of PF05728, 205.7 bits

SO3900 yqiA-like hydrolase, affects the cell envelope from Shewanella oneidensis MR-1
SO3900 conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1
Aligns to 1:189 / 191 (99.0%), covers 99.5% of PF05728, 196.4 bits

Shew_0548 yqiA-like hydrolase, affects the cell envelope from Shewanella loihica PV-4
Aligns to 1:189 / 192 (98.4%), covers 99.5% of PF05728, 181.8 bits

Sama_3044 yqiA-like hydrolase, affects the cell envelope from Shewanella amazonensis SB2B
Aligns to 1:189 / 191 (99.0%), covers 99.5% of PF05728, 171.0 bits

BUM88_18980 esterase from Acinetobacter calcoaceticus
Aligns to 2:189 / 193 (97.4%), covers 98.9% of PF05728, 138.1 bits

BUM88_04820 esterase from Acinetobacter calcoaceticus
Aligns to 2:112 / 162 (68.5%), covers 50.8% of PF05728, 43.7 bits

SGGB_0137 cinnamoyl ester hydrolase from Streptococcus gallolyticus subsp. gallolyticus ATCC 43143
Aligns to 66:237 / 244 (70.5%), covers 67.4% of PF05728, 29.9 bits

PA2168 hypothetical protein (NCBI) from Pseudomonas aeruginosa PAO1
Aligns to 73:226 / 258 (59.7%), covers 71.1% of PF05728, 27.6 bits

WP_024569139 alpha/beta hydrolase from Cupriavidus metallidurans
Aligns to 87:192 / 322 (32.9%), covers 42.8% of PF05728, 26.6 bits

TTE1809 Hydrolases of the alpha/beta superfamily (NCBI ptt file) from Thermoanaerobacter tengcongensis MB4
Aligns to 73:253 / 258 (70.2%), covers 74.9% of PF05728, 25.7 bits

LA2857 hypothetical protein from Leptospira interrogans serovar Lai str. 56601
Aligns to 75:187 / 335 (33.7%), covers 49.7% of PF05728, 24.4 bits

MSMEG_0625 hypothetical protein (NCBI) from Mycobacterium smegmatis str. MC2 155
Aligns to 231:393 / 399 (40.9%), covers 62.6% of PF05728, 23.5 bits

SAUSA300_0070 putative lysophospholipase (NCBI) from Staphylococcus aureus subsp. aureus USA300_FPR3757
Aligns to 71:257 / 271 (69.0%), covers 61.5% of PF05728, 22.2 bits

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory