PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF05853 (BKACE)

PF05853.12 hits 15 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

PS417_07250 2-deoxy-3-keto-D-ribonoate cleavage enzyme from Pseudomonas simiae WCS417
Aligns to 6:302 / 310 (95.8%), covers 100.0% of PF05853, 357.4 bits

H281DRAFT_00641 2-deoxy-3-keto-D-ribonate cleavage enzyme from Paraburkholderia bryophila 376MFSha3.1
Aligns to 7:304 / 312 (95.5%), covers 100.0% of PF05853, 355.0 bits

KCE_FUSNN / Q8RHX2 3-keto-5-aminohexanoate cleavage enzyme; EC 2.3.1.247 from Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) (see 2 papers)
Q8RHX2 3-keto-5-aminohexanoate cleavage enzyme (EC 2.3.1.247) from Fusobacterium nucleatum (see 2 papers)
FN1868 Hypothetical cytosolic protein (NCBI ptt file) from Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Aligns to 4:270 / 272 (98.2%), covers 100.0% of PF05853, 352.6 bits

PG1068 conserved hypothetical protein (NCBI) from Porphyromonas gingivalis W83
Aligns to 3:271 / 273 (98.5%), covers 100.0% of PF05853, 340.5 bits

KCE_CLOAI / B0VHH0 3-keto-5-aminohexanoate cleavage enzyme; EC 2.3.1.247 from Cloacimonas acidaminovorans (strain Evry) (see paper)
B0VHH0 3-keto-5-aminohexanoate cleavage enzyme (EC 2.3.1.247) from Candidatus Cloacimonas acidaminovorans (see paper)
Aligns to 3:274 / 276 (98.6%), covers 100.0% of PF05853, 333.2 bits

Pf6N2E2_4692 dehydrocarnitine cleavage enzyme (EC 2.3.1.-) from Pseudomonas fluorescens FW300-N2E2
Aligns to 4:291 / 295 (97.6%), covers 99.6% of PF05853, 329.4 bits

SMc01637 CONSERVED HYPOTHETICAL PROTEIN (NCBI ptt file) from Sinorhizobium meliloti 1021
Aligns to 8:297 / 300 (96.7%), covers 99.6% of PF05853, 326.3 bits

Q9HTH7 carnitine 3-dehydrogenase (EC 1.1.1.108) from Pseudomonas aeruginosa (see paper)
PA5387 hypothetical protein (NCBI) from Pseudomonas aeruginosa PAO1
Aligns to 4:291 / 294 (98.0%), covers 99.6% of PF05853, 324.4 bits

Rv1718 hypothetical protein (NCBI) from Mycobacterium tuberculosis H37Rv
Aligns to 2:268 / 272 (98.2%), covers 99.6% of PF05853, 291.8 bits

BMAA2044 hypothetical protein (NCBI) from Burkholderia mallei ATCC 23344
Aligns to 15:319 / 351 (86.9%), covers 99.6% of PF05853, 214.8 bits

YP_001638730 protein of unknown function DUF849 (RefSeq) from Methylobacterium extorquens PA1
Aligns to 18:285 / 285 (94.0%), covers 99.3% of PF05853, 211.9 bits

Mb1746 CONSERVED HYPOTHETICAL PROTEIN (NCBI) from Mycobacterium bovis AF2122/97
Aligns to 2:202 / 207 (97.1%), covers 72.6% of PF05853, 198.8 bits

DR0052 hypothetical protein (NCBI ptt file) from Deinococcus radiodurans R1
Aligns to 3:251 / 251 (99.2%), covers 94.5% of PF05853, 92.3 bits

YP_111366 hypothetical protein from Burkholderia pseudomallei K96243
BPSS1356 hypothetical protein (NCBI) from Burkholderia pseudomallei K96243
Aligns to 187:527 / 1125 (30.3%), covers 94.9% of PF05853, 89.6 bits

PA0812 hypothetical protein (NCBI) from Pseudomonas aeruginosa PAO1
Aligns to 40:237 / 431 (45.9%), covers 33.2% of PF05853, 38.0 bits

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory