PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF05957 (DUF883)

PF05957.13 hits 14 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

PA3040 hypothetical protein (NCBI) from Pseudomonas aeruginosa PAO1
Aligns to 12:109 / 109 (89.9%), covers 100.0% of PF05957, 120.5 bits

YPTB3485 putative membrane associated protein (NCBI) from Yersinia pseudotuberculosis IP 32953
Aligns to 8:101 / 101 (93.1%), covers 98.9% of PF05957, 105.4 bits

BP1057 putative membrane protein (NCBI) from Bordetella pertussis Tohama I
Aligns to 12:105 / 105 (89.5%), covers 98.9% of PF05957, 103.0 bits

YqjD / b3098 ribosome- and membrane-associated DUF883 domain-containing protein YqjD from Escherichia coli K-12 substr. MG1655 (see 5 papers)
YQJD_ECOLI / P64581 Uncharacterized protein YqjD from Escherichia coli (strain K12) (see 2 papers)
b3098 hypothetical protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
Aligns to 8:101 / 101 (93.1%), covers 98.9% of PF05957, 102.5 bits

PA2754 hypothetical protein (NCBI) from Pseudomonas aeruginosa PAO1
Aligns to 16:109 / 109 (86.2%), covers 98.9% of PF05957, 102.1 bits

YfbD / b2266 tail anchored inner membrane protein from Escherichia coli K-12 substr. MG1655 (see 7 papers)
ELAB_ECOLI / P0AEH5 Protein ElaB from Escherichia coli (strain K12) (see paper)
elaB / RF|NP_416769 protein elaB from Escherichia coli K12 (see paper)
b2266 hypothetical protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
NP_416769 putative membrane-anchored DUF883 family ribosome-binding protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 8:101 / 101 (93.1%), covers 97.9% of PF05957, 99.5 bits

STM2311 putative inner membrane protein (NCBI ptt file) from Salmonella typhimurium LT2
Aligns to 10:103 / 103 (91.3%), covers 98.9% of PF05957, 98.2 bits

PPUBIRD1_0113 DUF883 domain-containing protein from Pseudomonas putida BIRD-1
Aligns to 12:106 / 107 (88.8%), covers 98.9% of PF05957, 89.7 bits

PA1323 hypothetical protein (NCBI) from Pseudomonas aeruginosa PAO1
Aligns to 16:109 / 110 (85.5%), covers 96.8% of PF05957, 88.0 bits

YgaM / b2672 DUF883 domain-containing protein YgaM from Escherichia coli K-12 substr. MG1655 (see 8 papers)
YGAM_ECOLI / P0ADQ7 Uncharacterized protein YgaM from Escherichia coli (strain K12) (see paper)
Aligns to 15:107 / 109 (85.3%), covers 98.9% of PF05957, 87.7 bits

b2672 orf, hypothetical protein (VIMSS) from Escherichia coli str. K-12 substr. MG1655
Aligns to 19:111 / 113 (82.3%), covers 98.9% of PF05957, 87.6 bits

PM0612 unknown (NCBI ptt file) from Pasteurella multocida subsp. multocida str. Pm70
Aligns to 10:103 / 103 (91.3%), covers 100.0% of PF05957, 87.5 bits

Bamb_5535 protein of unknown function DUF883, ElaB (NCBI) from Burkholderia cepacia AMMD
Aligns to 38:129 / 129 (71.3%), covers 98.9% of PF05957, 82.1 bits

LB_340a hypothetical protein (RefSeq) from Leptospira interrogans serovar lai str. 56601
LIC20301 hypothetical protein (NCBI) from Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130
Aligns to 1:92 / 92 (100.0%), covers 88.3% of PF05957, 50.1 bits

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory