PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF06004 (DUF903)

PF06004.12 hits 17 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

Z4126 hypothetical protein (NCBI) from Escherichia coli O157:H7 EDL933
Aligns to 25:73 / 76 (64.5%), covers 100.0% of PF06004, 88.0 bits

YgdI / b2809 DUF903 domain-containing lipoprotein YgdI from Escherichia coli K-12 substr. MG1655 (see 3 papers)
b2809 orf, hypothetical protein (VIMSS) from Escherichia coli str. K-12 substr. MG1655
P65292 Uncharacterized lipoprotein YgdI from Escherichia coli (strain K12)
Aligns to 24:72 / 75 (65.3%), covers 100.0% of PF06004, 87.2 bits

SSON_2966 hypothetical protein (NCBI) from Shigella sonnei Ss046
Aligns to 25:73 / 76 (64.5%), covers 100.0% of PF06004, 87.2 bits

KPN_03160 hypothetical protein (RefSeq) from Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Aligns to 25:73 / 76 (64.5%), covers 95.9% of PF06004, 86.8 bits

STM2983 putative lipoprotein (NCBI ptt file) from Salmonella typhimurium LT2
Aligns to 24:72 / 75 (65.3%), covers 98.0% of PF06004, 85.4 bits

Ent638_3274 protein of unknown function DUF903 (RefSeq) from Enterobacter sp. 638
Aligns to 23:71 / 72 (68.1%), covers 100.0% of PF06004, 85.0 bits

YgdR / b2833 DUF903 domain-containing lipoprotein YgdR from Escherichia coli K-12 substr. MG1655 (see 2 papers)
S3041 hypothetical protein (NCBI ptt file) from Shigella flexneri 2a str. 2457T
b2833 hypothetical protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
Z4151 orf, hypothetical protein (NCBI ptt file) from Escherichia coli O157:H7 EDL933
Aligns to 23:71 / 72 (68.1%), covers 100.0% of PF06004, 84.1 bits

SF2823 orf, conserved hypothetical protein (NCBI ptt file) from Shigella flexneri 2a str. 301
Aligns to 25:73 / 76 (64.5%), covers 100.0% of PF06004, 82.0 bits

PSPTO2350 lipoprotein, putative (NCBI ptt file) from Pseudomonas syringae pv. tomato str. DC3000
Aligns to 25:73 / 74 (66.2%), covers 98.0% of PF06004, 78.5 bits

PA3031 hypothetical protein (NCBI) from Pseudomonas aeruginosa PAO1
Aligns to 24:72 / 73 (67.1%), covers 100.0% of PF06004, 75.8 bits

Ent638_0594 protein of unknown function DUF903 (RefSeq) from Enterobacter sp. 638
Aligns to 25:74 / 77 (64.9%), covers 98.0% of PF06004, 68.9 bits

BP2782 lipoprotein (NCBI) from Bordetella pertussis Tohama I
Aligns to 24:71 / 73 (65.8%), covers 100.0% of PF06004, 68.7 bits

PA2453 hypothetical protein (NCBI) from Pseudomonas aeruginosa PAO1
Aligns to 24:72 / 73 (67.1%), covers 98.0% of PF06004, 67.4 bits

SPA0081 putative lipoprotein (NCBI) from Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
STM0080 putative outer membrane lipoprotein (NCBI ptt file) from Salmonella typhimurium LT2
SEN0081 putative lipoprotein (RefSeq) from Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
Aligns to 24:73 / 76 (65.8%), covers 98.0% of PF06004, 67.2 bits

KPN_00042 hypothetical protein (RefSeq) from Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Aligns to 25:74 / 77 (64.9%), covers 98.0% of PF06004, 65.1 bits

PA5526 hypothetical protein (NCBI) from Pseudomonas aeruginosa PAO1
Aligns to 21:69 / 70 (70.0%), covers 95.9% of PF06004, 58.6 bits

STM1673 putative outer membrane lipoprotein (NCBI ptt file) from Salmonella typhimurium LT2
Aligns to 29:77 / 84 (58.3%), covers 98.0% of PF06004, 56.5 bits

Or search for genetic data about PF06004 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory