Family Search for PF06136 (SOK)
April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.
PF06136 hits 14 sequences in PaperBLAST's database above the trusted cutoff. Showing hits to curated sequences only. Or see all hits or try another family.
SOK3_ARATH / Q8GYT8 Protein SOSEKI 3; AtSOK3 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
Aligns to 34:122 / 540 (16.5%), covers 100.0% of PF06136, 169.3 bits
- function: SOSEKI proteins (SOK1-5) locally interpret global polarity cues and can influence cell division orientation to coordinate cell polarization relative to body axes, probably by guiding ANGUSTIFOLIA (AN) polarized localization.
subunit: Homodimer (By similarity). Forms long polymer filaments with other SOKs proteins polymers (e.g. SOK1, SOK2, SOK3 and SOK4) crucial for polar localization and biological activity (PubMed:32004461). Binds to ANGUSTIFOLIA (AN) (PubMed:32004461).
SOK5_ARATH / Q9FJF5 Protein SOSEKI 5; AtSOK5 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
Aligns to 47:135 / 423 (21.0%), covers 100.0% of PF06136, 168.9 bits
- function: SOSEKI proteins (SOK1-5) locally interpret global polarity cues and can influence cell division orientation to coordinate cell polarization relative to body axes.
subunit: Homodimer (By similarity). Forms long polymer filaments with other SOKs proteins polymers (e.g. SOK1, SOK2, SOK3 and SOK4) crucial for polar localization and biological activity (PubMed:32004461). Binds to ANGUSTIFOLIA (AN) (Probable).
SOK4_ARATH / Q8GY65 Protein SOSEKI 4; AtSOK4; Auxin-regulated protein 3; AtAuxRP3 from Arabidopsis thaliana (Mouse-ear cress) (see 3 papers)
Aligns to 20:108 / 343 (25.9%), covers 100.0% of PF06136, 157.4 bits
- function: SOSEKI proteins (SOK1-5) locally interpret global polarity cues and can influence cell division orientation to coordinate cell polarization relative to body axes, probably by guiding ANGUSTIFOLIA (AN) polarized localization (PubMed:30737509). Positive regulator of auxin (indole-3-acetic acid, IAA) biosynthesis and signaling pathway leading to the modulation of seedling growth, plant and inflorescence development (PubMed:31207460). Negative regulator of stress responses (e.g. salinity and osmotic stress) (PubMed:31207460).
subunit: Homodimer (By similarity). Forms long polymer filaments with other SOKs proteins polymers (e.g. SOK1, SOK2, SOK3 and SOK4) crucial for polar localization and biological activity (PubMed:32004461). Binds to ANGUSTIFOLIA (AN) (PubMed:32004461).
SOK2_ARATH / Q9LX14 Protein SOSEKI 2; AtSOK2; Protein UPSTREAM OF FLC from Arabidopsis thaliana (Mouse-ear cress) (see 5 papers)
Aligns to 46:134 / 414 (21.5%), covers 98.9% of PF06136, 156.0 bits
- function: Part of a three-gene cluster containing FLC, UFC and DFC, which is coordinately regulated in response to vernalization (PubMed:15186749, PubMed:18156133). Also regulated by FLX (PubMed:15186749). SOSEKI proteins (SOK1-5) locally interpret global polarity cues and can influence cell division orientation to coordinate cell polarization relative to body axes, probably by guiding ANGUSTIFOLIA (AN) polarized localization (PubMed:30737509, PubMed:32004461).
subunit: Homodimer (PubMed:30737509). Forms long polymer filaments with other SOKs proteins polymers (e.g. SOK1, SOK2, SOK3 and SOK4) crucial for polar localization and biological activity (PubMed:32004461). Binds to ANGUSTIFOLIA (AN) (PubMed:32004461).
SOK_MARPO / A0A2R6X6S3 Protein SOSEKI; MpSOK from Marchantia polymorpha (Common liverwort) (Marchantia aquatica) (see paper)
Aligns to 17:106 / 911 (9.9%), covers 98.9% of PF06136, 118.4 bits
- function: SOSEKI proteins locally interpret global polarity cues and can influence cell division orientation to coordinate cell polarization relative to body axes.
cofactor: Zn(2+)
subunit: Homodimer (By similarity). Forms long polymer filaments with other SOKs proteins polymers crucial for polar localization and biological activity (PubMed:32004461).
SOK1_ARATH / Q9SYJ8 Protein SOSEKI 1; AtSOK1 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
Aligns to 13:101 / 372 (23.9%), covers 100.0% of PF06136, 117.9 bits
- function: SOSEKI proteins (SOK1-5) locally interpret global polarity cues and can influence cell division orientation to coordinate cell polarization relative to body axes, probably by guiding ANGUSTIFOLIA (AN) polarized localization.
subunit: Homodimer (PubMed:30737509). Forms long polymer filaments with other SOKs proteins polymers (e.g. SOK1, SOK2, SOK3 and SOK4) crucial for polar localization and biological activity (PubMed:32004461). Binds to ANGUSTIFOLIA (AN) (PubMed:32004461).
SOK3_PHYPA / A0A2K1J5A5 Protein SOSEKI 3; PpSOK3 from Physcomitrium patens (Spreading-leaved earth moss) (Physcomitrella patens) (see paper)
Aligns to 10:100 / 709 (12.8%), covers 100.0% of PF06136, 107.0 bits
- function: SOSEKI proteins locally interpret global polarity cues and can influence cell division orientation to coordinate cell polarization relative to body axes.
cofactor: Zn(2+)
subunit: Homodimer (By similarity). Forms long polymer filaments with other SOKs proteins polymers crucial for polar localization and biological activity (PubMed:32004461).
SOK1_PHYPA / A0A2K1JJ00 Protein SOSEKI 1; PpSOK1 from Physcomitrium patens (Spreading-leaved earth moss) (Physcomitrella patens) (see paper)
Aligns to 10:100 / 701 (13.0%), covers 98.9% of PF06136, 100.7 bits
- function: SOSEKI proteins locally interpret global polarity cues and can influence cell division orientation to coordinate cell polarization relative to body axes.
cofactor: Zn(2+)
subunit: Homodimer (By similarity). Forms long polymer filaments with other SOKs proteins polymers crucial for polar localization and biological activity (PubMed:32004461).
SOK4_PHYPA / A9RNY0 Protein SOSEKI 4; PpSOK4 from Physcomitrium patens (Spreading-leaved earth moss) (Physcomitrella patens) (see paper)
Aligns to 24:114 / 390 (23.3%), covers 96.6% of PF06136, 88.7 bits
- function: SOSEKI proteins locally interpret global polarity cues and can influence cell division orientation to coordinate cell polarization relative to body axes.
subunit: Homodimer (By similarity). Forms long polymer filaments with other SOKs proteins polymers crucial for polar localization and biological activity (PubMed:32004461).
SOK2_PHYPA / A0A2K1L2D9 Protein SOSEKI 2; PpSOK2 from Physcomitrium patens (Spreading-leaved earth moss) (Physcomitrella patens) (see paper)
Aligns to 11:102 / 636 (14.5%), covers 97.8% of PF06136, 84.0 bits
- function: SOSEKI proteins locally interpret global polarity cues and can influence cell division orientation to coordinate cell polarization relative to body axes.
subunit: Homodimer (By similarity). Forms long polymer filaments with other SOKs proteins polymers crucial for polar localization and biological activity (PubMed:32004461).
Or search for genetic data about PF06136 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory