PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF06155 (DUF971)

PF06155.12 hits 24 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

Sama_0429 predicted FeS cluster maintenance protein from Shewanella amazonensis SB2B
Aligns to 9:91 / 126 (65.9%), covers 98.8% of PF06155, 101.9 bits

SO4164 predicted FeS cluster maintenance protein from Shewanella oneidensis MR-1
Aligns to 11:93 / 128 (64.8%), covers 98.8% of PF06155, 100.3 bits

Pf1N1B4_1554 predicted FeS cluster maintenance protein from Pseudomonas fluorescens FW300-N1B4
Aligns to 8:90 / 125 (66.4%), covers 100.0% of PF06155, 90.7 bits

AO353_12420 predicted FeS cluster maintenance protein from Pseudomonas fluorescens FW300-N2E3
Aligns to 9:91 / 126 (65.9%), covers 100.0% of PF06155, 88.7 bits

PA5055 hypothetical protein (NCBI) from Pseudomonas aeruginosa PAO1
Aligns to 7:88 / 123 (66.7%), covers 100.0% of PF06155, 83.8 bits

PP0211 conserved hypothetical protein (NCBI ptt file) from Pseudomonas putida KT2440
Aligns to 7:88 / 93 (88.2%), covers 92.9% of PF06155, 76.2 bits

AL066_11985 DUF971 domain-containing protein from Pseudomonas sp. In5
Aligns to 6:88 / 94 (88.3%), covers 95.3% of PF06155, 74.5 bits

XP_001007903 CobQ/CobB/MinD/ParA nucleotide-binding domain protein from Tetrahymena thermophila SB210
Aligns to 401:487 / 508 (17.1%), covers 95.3% of PF06155, 72.1 bits

NP_001017717 gamma-butyrobetaine dioxygenase from Danio rerio
Aligns to 54:138 / 325 (26.2%), covers 94.1% of PF06155, 66.2 bits

orf19.4316 potential gamma-butyrobetaine hydroxylase from Candida albicans (see paper)
Aligns to 7:89 / 396 (21.0%), covers 90.6% of PF06155, 62.7 bits

Q9QZU7 gamma-butyrobetaine dioxygenase (EC 1.14.11.1) from Rattus norvegicus (see paper)
Q9QZU7 γ-butyrobetaine hydroxylase subunit (EC 1.14.11.1) from Rattus norvegicus (see paper)
XP_017447515 gamma-butyrobetaine dioxygenase isoform X1 from Rattus norvegicus
Aligns to 9:92 / 387 (21.7%), covers 91.8% of PF06155, 58.7 bits

BODG_HUMAN / O75936 Gamma-butyrobetaine dioxygenase; EC 1.14.11.1; Gamma-butyrobetaine hydroxylase; Gamma-BBH; Gamma-butyrobetaine,2-oxoglutarate dioxygenase from Homo sapiens (Human) (see paper)
O75936 gamma-butyrobetaine dioxygenase (EC 1.14.11.1) from Homo sapiens (see paper)
O75936 γ-butyrobetaine dioxygenase (EC 1.14.11.1) from Homo sapiens (see 4 papers)
XP_005253216 gamma-butyrobetaine dioxygenase isoform X1 from Homo sapiens
Aligns to 9:92 / 387 (21.7%), covers 90.6% of PF06155, 57.2 bits

CIMG_03536 trimethyllysine dioxygenase from Coccidioides immitis RS
Aligns to 76:158 / 450 (18.4%), covers 81.2% of PF06155, 55.2 bits

CG10814 uncharacterized protein from Drosophila melanogaster
Aligns to 20:106 / 402 (21.6%), covers 95.3% of PF06155, 53.7 bits

XP_006498885 gamma-butyrobetaine dioxygenase isoform X1 from Mus musculus
Aligns to 9:92 / 387 (21.7%), covers 90.6% of PF06155, 53.5 bits

XP_006535917 trimethyllysine dioxygenase, mitochondrial isoform X1 from Mus musculus
Aligns to 51:134 / 342 (24.6%), covers 96.5% of PF06155, 47.1 bits

TMLH_RAT / Q91ZW6 Trimethyllysine dioxygenase, mitochondrial; EC 1.14.11.8; Epsilon-trimethyllysine 2-oxoglutarate dioxygenase; TML hydroxylase; TML-alpha-ketoglutarate dioxygenase; TML dioxygenase; TMLD from Rattus norvegicus (Rat) (see paper)
Q91ZW6 trimethyllysine dioxygenase (EC 1.14.11.8) from Rattus norvegicus (see paper)
Q91ZW6 ε-N-trimethyllysine hydroxylase subunit (EC 1.14.11.8) from Rattus norvegicus (see paper)
Aligns to 44:134 / 421 (21.6%), covers 96.5% of PF06155, 46.9 bits

TMLH_MOUSE / Q91ZE0 Trimethyllysine dioxygenase, mitochondrial; EC 1.14.11.8; Epsilon-trimethyllysine 2-oxoglutarate dioxygenase; TML hydroxylase; TML-alpha-ketoglutarate dioxygenase; TML dioxygenase; TMLD from Mus musculus (Mouse) (see paper)
Q91ZE0 trimethyllysine dioxygenase (EC 1.14.11.8) from Mus musculus (see 2 papers)
Aligns to 51:134 / 421 (20.0%), covers 96.5% of PF06155, 46.7 bits

TMLH_HUMAN / Q9NVH6 Trimethyllysine dioxygenase, mitochondrial; EC 1.14.11.8; Epsilon-trimethyllysine 2-oxoglutarate dioxygenase; Epsilon-trimethyllysine hydroxylase; TML hydroxylase; TML-alpha-ketoglutarate dioxygenase; TML dioxygenase; TMLD from Homo sapiens (Human) (see 7 papers)
Q9NVH6 trimethyllysine dioxygenase (EC 1.14.11.8) from Homo sapiens (see paper)
Aligns to 40:134 / 421 (22.6%), covers 95.3% of PF06155, 45.1 bits

XP_011529484 trimethyllysine dioxygenase, mitochondrial isoform X1 from Homo sapiens
Aligns to 5:83 / 370 (21.4%), covers 81.2% of PF06155, 42.5 bits

CH_124288 gamma-butyrobetaine dioxygenase from Magnaporthe grisea 70-15 (see paper)
Aligns to 182:275 / 573 (16.4%), covers 82.4% of PF06155, 40.4 bits

HF101_ARATH / Q6STH5 Fe-S cluster assembly factor HCF101, chloroplastic; Protein HIGH CHLOROPHYLL FLUORESCENCE 101 from Arabidopsis thaliana (Mouse-ear cress) (see 3 papers)
HCF101, NP_189086 ATP binding protein from Arabidopsis thaliana
AT3G24430 HCF101 (HIGH-CHLOROPHYLL-FLUORESCENCE 101); ATP binding (RefSeq) from Arabidopsis thaliana
Aligns to 430:516 / 532 (16.4%), covers 78.8% of PF06155, 37.2 bits

CG4335 uncharacterized protein from Drosophila melanogaster
Aligns to 6:78 / 364 (20.1%), covers 77.6% of PF06155, 33.9 bits

AOL_s00078g288 hypothetical protein from Arthrobotrys oligospora ATCC 24927
Aligns to 96:182 / 519 (16.8%), covers 76.5% of PF06155, 30.6 bits

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory