Family Search for PF06252 (GemA)
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Running HMMer for PF06252
PF06252 hits 13 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
BCAS0553 Mu gp16 gemA from Burkholderia cenocepacia J2315
Aligns to 28:141 / 146 (78.1%), covers 100.0% of PF06252, 139.7 bits
SO2667 conserved hypothetical protein from Shewanella oneidensis MR-1
Aligns to 17:137 / 177 (68.4%), covers 100.0% of PF06252, 126.6 bits
HD0110 Mu-like phage E16 protein from Haemophilus ducreyi 35000HP
Aligns to 22:151 / 154 (84.4%), covers 100.0% of PF06252, 114.7 bits
GEMA_BPMU / Q38494 GemA protein; Gene product 16; gp16 from Escherichia phage Mu (Bacteriophage Mu) (see paper)
Aligns to 19:140 / 183 (66.7%), covers 100.0% of PF06252, 108.6 bits
- function: Early protein responsible for decreasing host DNA gyrase activity. Promotes DNA relaxation of bacterial host genome. Modulates the expression of various host genes probably controlled by supercoiling of their promoters. Host genes affected include DNA replication and cell division determinants.
subunit: Homodimer.
ECs4960 hypothetical protein from Escherichia coli O157:H7 str. Sakai
Aligns to 18:140 / 169 (72.8%), covers 100.0% of PF06252, 105.7 bits
HI1488 E16 protein, putative from Haemophilus influenzae Rd KW20
Aligns to 20:151 / 185 (71.4%), covers 100.0% of PF06252, 104.1 bits
NMY220_0962, NMY233_0948 phage protein GemA/Gp16 family protein from Neisseria meningitidis NM233
Aligns to 1:113 / 127 (89.0%), covers 100.0% of PF06252, 100.0 bits
- Whole genome sequencing to investigate the emergence of clonal complex 23 Neisseria meningitidis serogroup Y disease in the United States
Krauland, PloS one 2012 - “...cleavage/methylation domain protein 0.0173 0.3737 NMY220_0538 NMY233_0511 magnesium and cobalt efflux protein CorC 0.0964 0.1445 NMY220_0962 NMY233_0948 conserved hypothetical protein 0.0375 0.3675 NMY220_1299 NMY233_1283 conserved hypothetical protein 0.0959 0.2951 NMY220_1241 NMY233_1228 conserved hypothetical protein 0.0936 0.3545 NMY220_0390 NMY233_0372 shikimate 5-dehydrogenase (AroE) 0.0951 0.2212 NMY220_1068 NMY233_1071 putative...”
- “...domain protein 0.0173 0.3737 NMY220_0538 NMY233_0511 magnesium and cobalt efflux protein CorC 0.0964 0.1445 NMY220_0962 NMY233_0948 conserved hypothetical protein 0.0375 0.3675 NMY220_1299 NMY233_1283 conserved hypothetical protein 0.0959 0.2951 NMY220_1241 NMY233_1228 conserved hypothetical protein 0.0936 0.3545 NMY220_0390 NMY233_0372 shikimate 5-dehydrogenase (AroE) 0.0951 0.2212 NMY220_1068 NMY233_1071 putative lipoprotein...”
NMB0985 E16-related protein from Neisseria meningitidis MC58
Aligns to 39:151 / 165 (68.5%), covers 100.0% of PF06252, 98.1 bits
- Transcriptome analysis of Neisseria meningitidis during infection
Dietrich, Journal of bacteriology 2003 - “...the genes of interest (mdaB, siaA, ctrC, secY, NMB0200, NMB0985, and NMB2052) were cloned into a PCR II vector (TA cloning kit; Invitrogen, Leiden, The...”
- “...by University of California, Berkeley Hypothetical 159 NMB0985). The RT-PCR data confirmed the microarray-observed regulation of mdaB, siaA, ctrC, secY,...”
NMA1186 hypothetical protein NMA1186 from Neisseria meningitidis Z2491
NMA1301 hypothetical protein NMA1301 from Neisseria meningitidis Z2491
Aligns to 38:150 / 164 (68.9%), covers 100.0% of PF06252, 95.5 bits
NCGM2_4888 regulatory protein GemA from Pseudomonas aeruginosa NCGM2.S1
Aligns to 20:132 / 188 (60.1%), covers 99.2% of PF06252, 78.1 bits
- Emergence and Spread of Epidemic Multidrug-Resistant Pseudomonas aeruginosa
Miyoshi-Akiyama, Genome biology and evolution 2017 - “...example, 1,956,904_1,968,105 (NCGM2_1807 to NCGM2_1819) and 4,195,981_4,221,917 (NCGM2_3853 to NCGM2_3884) in subclades 3 and 5,270,138_5,299,359 (NCGM2_4888 to NCGM_4926) and 5,796,989_5,802,393 (NCGM2_5407 to NCGM2_5412) in subclade 4. The geographic location and the accumulated unique SNPs in regions in each subclade, especially in subclades 3 and 4, suggest...”
CJE0258 hypothetical protein from Campylobacter jejuni RM1221
Aligns to 25:145 / 149 (81.2%), covers 95.8% of PF06252, 59.9 bits
Q7259_00585 regulatory protein GemA from Campylobacter jejuni
Aligns to 25:145 / 149 (81.2%), covers 95.8% of PF06252, 59.8 bits
HH_0755 phage protein GemA/Gp16 family protein from Helicobacter hepaticus ATCC 51449
Aligns to 23:126 / 128 (81.2%), covers 94.1% of PF06252, 35.8 bits
- Comparative analysis of prophage-like elements in Helicobacter sp. genomes
Fan, PeerJ 2016 - “...integrase (HH_0750), DNA transposition protein (HH_0752), host-nuclease inhibitor protein Gam (HH_0754), Rha family transcriptional regulator (HH_0755), DNA-binding protein RdgB (HH_0756), phage Tail Collar Domain family (HH_0761), DNA methyltransferase (HH_0763), tape measure protein (HH_0771), and carbohydrate-binding protein (HH_0772). 10.7717/peerj.2012/fig-3 Figure 3 The genomic organization of Helicobacter prophage...”
Or search for genetic data about PF06252 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory