PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF06625 (DUF1151)

PaperBLAST, GapMind, SitesBLAST, and Sites on a Tree will be down for server maintenance on Friday March 29.

Running HMMer for PF06625

PF06625 hits 8 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

Q9H098 Protein FAM107B from Homo sapiens
Aligns to 12:120 / 131 (83.2%), covers 99.1% of PF06625, 136.2 bits

F107B_MOUSE / Q3TGF2 Protein FAM107B from Mus musculus (Mouse) (see paper)
Aligns to 12:120 / 131 (83.2%), covers 99.1% of PF06625, 136.0 bits

NP_113641 protein FAM107B isoform b from Homo sapiens
Aligns to 187:295 / 306 (35.6%), covers 99.1% of PF06625, 133.8 bits

F107A_HUMAN / O95990 Actin-associated protein FAM107A; Down-regulated in renal cell carcinoma 1; Protein TU3A from Homo sapiens (Human) (see 5 papers)
Aligns to 26:133 / 144 (75.0%), covers 99.1% of PF06625, 131.3 bits

NP_001269643 actin-associated protein FAM107A isoform c from Homo sapiens
Aligns to 57:164 / 175 (61.7%), covers 99.1% of PF06625, 130.1 bits

F107A_RAT / M0R3K6 Actin-associated protein FAM107A from Rattus norvegicus (Rat) (see paper)
Aligns to 13:120 / 131 (82.4%), covers 99.1% of PF06625, 129.6 bits

XP_038949391 actin-associated protein FAM107A isoform X1 from Rattus norvegicus
Aligns to 54:161 / 172 (62.8%), covers 99.1% of PF06625, 128.8 bits

F107A_MOUSE / Q78TU8 Actin-associated protein FAM107A from Mus musculus (Mouse) (see 2 papers)
Aligns to 26:133 / 144 (75.0%), covers 99.1% of PF06625, 128.5 bits

Or search for genetic data about PF06625 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory