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Family Search for PF06649 (DUF1161)

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Running HMMer for PF06649

PF06649 hits 8 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

PA14_00480 hypothetical protein from Pseudomonas aeruginosa UCBPP-PA14
Q9I793 DUF1161 domain-containing protein from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PA0039 hypothetical protein from Pseudomonas aeruginosa PAO1
Aligns to 25:74 / 75 (66.7%), covers 100.0% of PF06649, 92.2 bits

YPTB2193 hypothetical protein from Yersinia pseudotuberculosis IP 32953
Aligns to 23:76 / 81 (66.7%), covers 100.0% of PF06649, 89.8 bits

PFL_0044 conserved hypothetical protein from Pseudomonas fluorescens Pf-5
Aligns to 24:74 / 77 (66.2%), covers 98.1% of PF06649, 87.9 bits

PA0060 hypothetical protein from Pseudomonas aeruginosa PAO1
Aligns to 24:74 / 77 (66.2%), covers 98.1% of PF06649, 86.7 bits

PP0090 conserved hypothetical protein from Pseudomonas putida KT2440
Aligns to 45:95 / 98 (52.0%), covers 98.1% of PF06649, 86.1 bits

PP0087 conserved hypothetical protein from Pseudomonas putida KT2440
Aligns to 38:86 / 87 (56.3%), covers 100.0% of PF06649, 81.5 bits

YnfD / b1586 DUF1161 domain-containing protein YnfD from Escherichia coli K-12 substr. MG1655 (see 2 papers)
b1586 orf, hypothetical protein from Escherichia coli str. K-12 substr. MG1655
NP_416103 DUF1161 domain-containing protein YnfD from Escherichia coli str. K-12 substr. MG1655
P76172 Uncharacterized protein YnfD from Escherichia coli (strain K12)
Aligns to 26:79 / 101 (53.5%), covers 100.0% of PF06649, 68.6 bits

ECs2292 hypothetical protein from Escherichia coli O157:H7 str. Sakai
Z2573 orf, hypothetical protein from Escherichia coli O157:H7 EDL933
Aligns to 27:80 / 102 (52.9%), covers 100.0% of PF06649, 68.6 bits

Or search for genetic data about PF06649 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory