Family Search for PF06688 (DUF1187)

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PF06688 hits 4 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

ECs1931 hypothetical protein from Escherichia coli O157:H7 str. Sakai
Aligns to 2:62 / 62 (98.4%), covers 100.0% of PF06688, 132.2 bits

• Whole genome shotgun sequencing revealed highly polymorphic genome regions and genes in Escherichia coli O157:H7 isolates collected from a single feedlot
  Gao, PloS one 2018
  • “...DNA-binding protein 410 21.95 ECs1588 putative transcriptional activator 272 18.38 ECs1599 hypothetical protein 281 35.59 ECs1931 hypothetical protein 188 31.91 ECs1932 restriction alleviation and modification enhancement protein 149 20.13 ECs1933 recombinase recT protein 809 16.07 ECs1936 hypothetical protein 233 21.46 ECs1944 hypothetical protein 788 15.23 ECs1956...”
• Identification of Escherichia coli O157:H7 genomic regions conserved in strains with a genotype associated with human infection
  Steele, Applied and environmental microbiology 2007
  • “...4 4 5 0 0 0 5 5 No Yes Yes Yes No No 91/92/93 ECs1927 ECs1931 and -2 ECs1937 to -40 ECs1945 ECs1953 ECs1954 ECs1957 10 10 10 10 10 10 10 10 0 0 2 0 0 0 5 0 0 0...”
• Genome evolution in major Escherichia coli O157:H7 lineages
  Zhang, BMC genomics 2007
  • “...b1345 100% 0% 0% Sp10 ECs1930 (Z2414) 3 hypothetical protein; ydaQ 100% 0% 8% Sp10 ECs1931 (Z2413) 3 hypothetical protein; ydaC 100% 0% 8% Sp10 ECs1932 (Z2412) restriction alleviation and modification enhancement; lar 100% 0% 0% Sp10 ECs1937 (Z2404) phage superinfection exclusion protein; sieB 100% 0%...”

YdaC / b1347 Rac prophage; double-strand break reduction protein from Escherichia coli K-12 substr. MG1655 (see 4 papers)
RCBA_ECOLI / P33230 Double-strand break reduction protein from Escherichia coli (strain K12) (see 2 papers)
ydaC / ECOCYC|EG11901-MONOMER uncharacterized protein ydaC from Escherichia coli K12 (see 2 papers)
b1347 Rac prophage; predicted protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 2:62 / 69 (88.4%), covers 100.0% of PF06688, 131.7 bits

• function: Helps to maintain the integrity of the chromosome by lowering the steady-state level of double strand breaks (PubMed:22343303). This region of DNA acts as an antitoxin to toxin RalR, a DNase, but it seems to be sRNA RalA that has the antitoxin activity and not this putative protein. Therefore the identity of this as a protein-coding gene has been cast into doubt (PubMed:24748661).
  disruption phenotype: Mutants show increased numbers of double-strand breaks (PubMed:22343303). The single ralR and double ralR-ralA mutant have increased sensitivity to the antibiotic fosfomycin.
• Medium-Chain-Length Fatty Acid Catabolism in Cupriavidus necator H16: Transcriptome Sequencing Reveals Differences from Long-Chain-Length Fatty Acid β-Oxidation and Involvement of Several Homologous Genes
  Strittmatter, Applied and environmental microbiology 2023 (secret)
• In vitro transcription profiling of the σS subunit of bacterial RNA polymerase: re-definition of the σS regulon and identification of σS-specific promoter sequence elements
  Maciag, Nucleic acids research 2011
  • “...alleviation and modification enhancement, in recET-lar-ydaCQ operon b1348 1.93 ydaC Rac prophage, in recET-lar-ydaCQ operon b1347 1.74 as recT ydaQ Rac prophage, possible recombinase, in recET-lar-ydaCQ operon b1346 1.66 as recT Polyamine metabolism puuB -glutamylputrescine oxidase b1301 1.61 S ( 19 ) gabD Succinate semialdehyde dehydrogenase...”
• Effect of an artificial RNA marker on gene expression in Escherichia coli
  Tucker, Applied and environmental microbiology 2005
  • “...0.009194 1.699 Facilitated diffusion of glycerol ydaC napA b1347 b2206 0.008747 0.001326 1.637 1.549 napH b2204 0.000005 1.548 yedE b1929 0.002599 1.512 yhhQ...”
• Genome-wide transcriptional profiling of the Escherichia coli responses to superoxide stress and sodium salicylate
  Pomposiello, Journal of bacteriology 2001
  • “...b0929 b4245 b0945 b4387 b1656 b1646 b2497 b0193 b0315 b1347 b2597 b3087 b3088 b3112 b3516 b3582 b3879 b3888 b4048 b4333 b4337 b4380 b4394 argR aspA b0218 b0271...”

Z2413 unknown protein encoded within prophage CP-933R from Escherichia coli O157:H7 EDL933
Aligns to 26:86 / 86 (70.9%), covers 100.0% of PF06688, 130.8 bits

• Genome evolution in major Escherichia coli O157:H7 lineages
  Zhang, BMC genomics 2007
  • “...100% 0% 0% Sp10 ECs1930 (Z2414) 3 hypothetical protein; ydaQ 100% 0% 8% Sp10 ECs1931 (Z2413) 3 hypothetical protein; ydaC 100% 0% 8% Sp10 ECs1932 (Z2412) restriction alleviation and modification enhancement; lar 100% 0% 0% Sp10 ECs1937 (Z2404) phage superinfection exclusion protein; sieB 100% 0% 0%...”

STY2075 conserved hypothetical protein from Salmonella enterica subsp. enterica serovar Typhi str. CT18
Aligns to 2:62 / 62 (98.4%), covers 100.0% of PF06688, 129.5 bits

• Comparative genomics of Salmonella enterica serovar Typhi strains Ty2 and CT18
  Deng, Journal of bacteriology 2003
  • “...STY2068 STY2069 STY2070 STY2071 STY2072 STY2073 STY2074 STY2075 STY2076 STY2077 STY2419 STY2420 STY3188 STY3189 STY3191 STY3192 STY3193 STY4124 STY4125 STY4580...”

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