Family Search for PF06693 (DUF1190)
April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.
PF06693 hits 7 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
YgiB / b3037 DUF1190 domain-containing protein YgiB from Escherichia coli K-12 substr. MG1655 (see 3 papers)
S3282 hypothetical protein from Shigella flexneri 2a str. 2457T
P0ADT2 UPF0441 protein YgiB from Escherichia coli (strain K12)
b3037 conserved outer membrane protein from Escherichia coli str. K-12 substr. MG1655
Z4394 hypothetical protein from Escherichia coli O157:H7 EDL933
Aligns to 41:210 / 223 (76.2%), covers 98.7% of PF06693, 189.2 bits
- Ileal microbial shifts after Roux-en-Y gastric bypass orchestrate changes in glucose metabolism through modulation of bile acids and L-cell adaptation
Dang, Scientific reports 2021 - “...were separated into single cages to avoid cage effects biasing microbial analysis. Sterile HFD (Bio-Serv S3282, 60% calories from fat) was introduced at 6 weeks of age and continued throughout the experiment, except during the perioperative period. Body weight was monitored weekly. RYGB or sham surgery...”
- Western-type diet influences mortality from necrotising pancreatitis and demonstrates a central role for butyrate
van, Gut 2021 - “...and either standard chow diet (SD) or a WD that contained 60% polyunsaturated fatty acids (S3282, Bio-Serv, Flemington, New Jersey, USA) and no soluble fibres, as previously described. 5 The animals were sacrificed by CO suffocation at either 24 hours or 72 hours following surgery, or...”
- Escherichia coli limits Salmonella Typhimurium infections after diet shifts and fat-mediated microbiota perturbation in mice
Wotzka, Nature microbiology 2019 - “...As indicated, mice were shifted to a Western-type diet without fiber (symbol: , WD, BioServ, S3282; 60% kcal fat; irradiated; per weight: 36% fat, 20.5% protein, 35.7% carbohydrates, 0% fiber), control diet without fiber (symbol: , BioServ, S4031; 16% kcal fat; irradiated; per weight: 7.2% fat,...”
- Comparative Analysis of Outer Membrane Vesicle Isolation Methods With an Escherichia coli tolA Mutant Reveals a Hypervesiculating Phenotype With Outer-Inner Membrane Vesicle Content
Reimer, Frontiers in microbiology 2021 - “...INF Increased in tolA P0ADS6 yggE Uncharacterized protein YggE tolA <0.00010 INF Increased in tolA P0ADT2 ygiB UPF0441 protein YgiB tolA 0.044 INF Increased in tolA P0ADU5 ygiW Protein YgiW WT 0.016 1.8 Increased in tolA P64596 yraP Uncharacterized protein YraP BOTH 0.039 9.1 Increased in...”
- Genome-Scale Mapping of Escherichia coli σ54 Reveals Widespread, Conserved Intragenic Binding
Bonocora, PLoS genetics 2015 - “...+ b3028 mdaB 964 11.709 IS37 3178185 1 GC GGC GCGGGAT TTGC A 3178183 + b3037 ygiB + b3038 ygiC 258 10.055 IS38 3206700 2 A TGGC ACCAAAC TTGC T 3206687 + b3063 ttdT + b3065 rpsU 2103 11.358 IS39 3241894 1 T TGG TGCCGAATA TGC...”
- Membrane stresses induced by overproduction of free fatty acids in Escherichia coli
Lennen, Applied and environmental microbiology 2011 - “...b1530 b1531 b1532 b1611 b1852 b1973 b2159 b2237 b3035 b3037 b3038 b3506 b3507 b3508 b3509 b3510 b3624 b3625 b3800 b3908 b3924 b4025 b4062 b4177 b4396 b4637 ybaO...”
- Disruption of rcsB by a duplicated sequence in a curli-producing Escherichia coli O157:H7 results in differential gene expression in relation to biofilm formation, stress responses and metabolism
Sharma, BMC microbiology 2017 - “...8.6E-06 ycfJ Z1749 Membrane protein 24.98 1.5E-14 ycfT Z1756 Inner membrane protein 3.25 6.5E-04 ygiB Z4394 Outer membrane protein 1.55 0.01 upp P Z4410 Undecaprenyl pyrophosphate phosphatase 1.72 0.01 yjbE Z5624 Predicted protein mediating extracellular polysaccharide biosynthesis 19.61 1.0E-03 yjbF Z5625 Predicted protein mediating extracellular polysaccharide...”
- Characterizing the Escherichia coli O157:H7 proteome including protein associations with higher order assemblies
Pieper, PloS one 2011 - “...ymcA 78668 L (IM or OM) OM 120 9 SSAC 19 H 2 hypothetical protein Z4394 Z4394 ygiB 23478 L (IM or OM) PP 110 46 LAGC 37 E 2 putative lipoprotein YnbE Z2327 ynbE 6815 L (IM or OM) unkn 109 0 LVGC 17 T...”
SEN3030 possible lipoprotein from Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
Aligns to 41:210 / 223 (76.2%), covers 98.1% of PF06693, 188.1 bits
AL538_RS15985 DUF1190 domain-containing protein from Vibrio harveyi
Aligns to 39:188 / 189 (79.4%), covers 95.0% of PF06693, 96.6 bits
STM4375 putative inner membrane protein from Salmonella typhimurium LT2
Aligns to 65:211 / 212 (69.3%), covers 97.5% of PF06693, 69.5 bits
- Salmonella serovar identification using PCR-based detection of gene presence and absence
Arrach, Journal of clinical microbiology 2008 - “...STM3941, STM4031, STM4191, STM4197, STM4209, STM4317, STM4375, STM4381, STM4523, STM4592, STM4594, PSLT016, PSLT018, PSLT025, PSLT085, STY1605, STY2296,...”
SC4250 putative inner membrane protein from Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
Aligns to 65:211 / 212 (69.3%), covers 97.5% of PF06693, 69.3 bits
- A new class of Caulobacter crescentus flagellar genes
Leclerc, Journal of bacteriology 1998 - “...SC3809 SC3898 SC3899 SC3971 SC3973 SC3975 SC4016 SC4250 Wild type syn-1000 bla-6 syn-1000 ctrA401 recA526 zzz::Tn5 str-30 flmE102 (formerly flaZ102) flmA104...”
- “...of Caulobacter strains SC3971, SC3973, SC4016, and SC4250 were pulse-labeled with [35S]methionine at 15-min intervals during the cell cycle. (A)...”
YjfM / b4185 DUF1190 domain-containing protein YjfM from Escherichia coli K-12 substr. MG1655 (see paper)
b4185 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 65:211 / 212 (69.3%), covers 97.5% of PF06693, 63.7 bits
sll0022 unknown protein from Synechocystis sp. PCC 6803
Aligns to 54:246 / 249 (77.5%), covers 84.3% of PF06693, 29.1 bits
Or search for genetic data about PF06693 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory