Family Search for PF06788 (UPF0257)

April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.

PF06788 hits 5 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

c1975 hypothetical protein from Escherichia coli CFT073
Aligns to 2:236 / 236 (99.6%), covers 100.0% of PF06788, 435.6 bits

• Humidity and deposition solution play a critical role in virus inactivation by heat treatment on N95 respirators
  Rockey, 2020
• Genome-wide detection of fitness genes in uropathogenic Escherichia coli during systemic infection
  Subashchandrabose, PLoS pathogens 2013
  • “...protein 8.73 Between tRNAs, ValX and ValY 8.73 ydgI c1997 Putative arginine/ornithine antiporter 8.72 ynfC c1975 Hypothetical protein 8.62 c2393 Hypothetical protein 8.62 yeeO c2448 Putative efflux protein of MatE family 8.56 ychK c1698 Ortholog of RssA, a putative phospholipases 8.54 narX c1682 Nitrate/nitrite sensor protein...”

YnfC / b1585 UPF0257 family lipoprotein YnfC from Escherichia coli K-12 substr. MG1655 (see 5 papers)
b1585 orf, hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 2:236 / 236 (99.6%), covers 100.0% of PF06788, 434.4 bits

• 18th Congress of the European Hematology Association, Stockholm, Sweden, June 13–16, 2013
  , Haematologica 2013
• Genome-wide analysis of lipoprotein expression in Escherichia coli MG1655
  Brokx, Journal of bacteriology 2004
  • “...ynfC smpA yggG yidQ yidX yjeI b0196 b0557 b0867 b0909 b1193 b1379 b1585 b2617 b2936 b3688 b3696 b4144 220.45 P 98.2 P 48.35 P 15.1 P 106.5 P 35.1 P 25 P 199.45...”
  • “...(b0557), ybjR (b0867), ycaL (b0909), hslJ (b1379), ynfC (b1585), smpA (b2617), yggG (b2936), yidQ (b3688), yidX (b3696), and yjeI (b4144)--are included in the...”

ECs2291 hypothetical protein from Escherichia coli O157:H7 str. Sakai
Z2572 hypothetical protein from Escherichia coli O157:H7 EDL933
Aligns to 2:236 / 236 (99.6%), covers 100.0% of PF06788, 433.5 bits

• Pre-Harvest Survival and Post-Harvest Chlorine Tolerance of Enterohemorrhagic Escherichia coli on Lettuce
  Tyagi, Toxins 2019
  • “...type IV secretion protein Rhs 3.9 3.0 ECs2155 nleG6-2 T3SS secreted effector NleG 4.0 3.3 ECs2291 ynfC Hypothetical UPF0257 lipoprotein ynfC precursor 2.4 2.7 ECs2333 blr beta-lactam resistance membrane protein 1.8 11.6 6.3 ECs2672 espR3 T3SS effector-like protein EspR 5.3 3.9 ECs2765 dicC cell division control...”
• Nucleotide sequence of the integration site of the temperate bacteriophage 6220, which carries the Shiga toxin gene stx(1ox3)
  Koch, Journal of bacteriology 2003
  • “...phages 933W and P22 and to the E. coli genes Z2572 to Z2577 are shown. The transition region analyzed in panel B is depicted schematically. The positions of...”
  • “...EDL933 and a sequence corresponding to the 5 end of gene Z2572. The gene order in CB6220 turned out to be identical to that in EDL933. In order to determine...”

ECs_2291 lipoprotein from Escherichia coli O157:H7 str. Sakai
Aligns to 14:248 / 248 (94.8%), covers 100.0% of PF06788, 433.2 bits

• Pre-Harvest Survival and Post-Harvest Chlorine Tolerance of Enterohemorrhagic Escherichia coli on Lettuce
  Tyagi, Toxins 2019
  • “...( Tables S1 and S2 ). Only five genes were upregulated in both strains: bssS, ECs_2291, elaA, lacY, and ECs_4188. Expression of these genes was significantly higher on day 5 compared to either day 1 or day 3 in O157 Sakai, while expression was significantly higher...”

t1422 conserved hypothetical protein from Salmonella enterica subsp. enterica serovar Typhi Ty2
Aligns to 2:236 / 236 (99.6%), covers 100.0% of PF06788, 431.2 bits

• The European Union summary report on antimicrobial resistance in zoonotic and indicator bacteria from humans, animals and food in 2021-2022
  European, EFSA journal. European Food Safety Authority 2024 (no snippet)

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