Family Search for PF06884 (DUF1264)
April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.
PF06884 hits 21 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
FVEG_03197 hypothetical protein from Fusarium verticillioides 7600
Aligns to 35:209 / 224 (78.1%), covers 99.4% of PF06884, 268.8 bits
BBA_03936 DUF1264 domain-containing protein from Beauveria bassiana ARSEF 2860
Aligns to 32:205 / 220 (79.1%), covers 99.4% of PF06884, 265.8 bits
OBP1A_ARATH / Q9ZVY7 Oil body-associated protein 1A from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT1G05510 hypothetical protein from Arabidopsis thaliana
NP_172042 naphthalene 1,2-dioxygenase subunit alpha (DUF1264) from Arabidopsis thaliana
Aligns to 37:204 / 241 (69.7%), covers 99.4% of PF06884, 250.6 bits
- disruption phenotype: Irregularly expanded oil-containing structures, 40% reduction of triacylglycerols (TAG) content in seeds and 98% decreased seed germination rate.
- Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis
Huang, BMC plant biology 2018 - “...salt stress ns 1.76 (0.0099) AT2G38310 ATPYL4, PYR1-LIKE 4 ABA-activated signaling pathway ns 1.72 (0.013) AT1G05510 OBAP1A, OIL BODY-ASSOCIATED PROTEIN1A Response to ABA 1.81 (0.0050) 1.66 (0.021) AT3G04720 PR4, PATHOGENESIS-RELATED 4 Defense and salt response 1.65 (0.019) 1.65 (0.023) AT5G47450 TIP2;3, TONOPLAST INTRINSIC PROTEIN 2;3 Response...”
- Proteomic Dissection of Seed Germination and Seedling Establishment in Brassica napus
Gu, Frontiers in plant science 2016 - “...al., 2004 , 2006 ). A seed maturation-related protein (spot 1025, uncharacterized protein, corresponding gene: AT1G05510 ) induced during the B. napus seed germination was also observed; this showed that the maturation program might also be recapitulated during early stages of seed germination in B. napus...”
- Identification of conserved drought-adaptive genes using a cross-species meta-analysis approach
Shaar-Moshe, BMC plant biology 2015 - “...(AT4G34950, nodulin family protein) Hormone metabolism Abscisic acid loc_os02g52780 (AT3G19290, ABF4), loc_os03g57680 (AT5G20960, AAO1), loc_os05g49440 (AT1G05510) Gibberelic acid loc_os06g15620 (AT1G74670, GASA6), loc_os03g42130 (AT3G19000, oxidoreductase) Ethylene loc_os01g32780 (AT1G68300, USP family protein), loc_os12g36640 (AT2G47710, UPS family protein), loc_os01g51430 (AT2G26070, RTE1) Response to stimulus Abiotic and biotic stress Heat,...”
- Toward the identification and regulation of the Arabidopsis thaliana ABI3 regulon
Mönke, Nucleic acids research 2012 - “...gene3 TP AT5G07330 Unknown CT AT4G26740 ATS1,seed gene1 CTPA AT1G02700 Unknown CT AT4G09610 GASA2 CP AT1G05510 Unknown CT AT4G09600 GASA3 CA AT1G27461 Unknown CT AT2G42000 Metallothionin-like CTP AT2G21820 Unknown CPA AT2G23240 Metallothionin-like TP AT5G04000 Unknown CA AT2G15010 Thionin TP AT4G27530 Unknown TP AT2G38905 Low temp., salt...”
- Physical Mapping in a Triplicated Genome: Mapping the Downy Mildew Resistance Locus Pp523 in Brassica oleracea L
Carlier, G3 (Bethesda, Md.) 2011 - “...NS At1g01460 Map R C5 1P13 a Not Seq Not Seq PCR C8a 15N10 At1g05310 At1g05510 PCR C8a 120k18 At1g01410 NS PCR C5 53G16 a NS At1g02100 PCR C8a 9O6 At1g05440 At1g05590 PCR C8a 74L5 NS NS PCR C5 88O13 a At1g01820 TnLs PCR C8a 2M20...”
- The CHD3 remodeler PICKLE promotes trimethylation of histone H3 lysine 27
Zhang, The Journal of biological chemistry 2008 - “...genes are also identified by GFWER(1,0.05). AGI At1g05510 At1g17810 At1g21520 At1g28300 At3g26740 At4g04630 At4g09610 At5g45690 At5g63750 Gene Identified by...”
- Application of One Sided t-tests and a Generalized Experiment Wise Error Rate to High-Density Oligonucleotide Microarray Experiments: An Example Using Arabidopsis
Muir, Journal of data science : JDS 2006 (secret) - The evolutionary conserved oil body associated protein OBAP1 participates in the regulation of oil body size.
López-Ribera, Plant physiology 2014 - GeneRIF: Oil Body Associated Protein1 (OBAP1) is necessary to maintain the structure of the oil bodies and for seed germination in Arabidopsis.[OBAP1a]
M8ARL1 Oil body-associated protein 1A from Triticum urartu
Aligns to 57:224 / 261 (64.4%), covers 98.8% of PF06884, 249.7 bits
- Proteomic Data Integration Highlights Central Actors Involved in Einkorn (Triticum monococcum ssp. monococcum) Grain Filling in Relation to Grain Storage Protein Composition
Bancel, Frontiers in plant science 2019 - “...M8A2L5 Uncharacterized protein/water stress induced protein 0.91 M8A2R3 Uncharacterized protein/Ricin B-like lectin EULS3-like family -0.81 M8ARL1 Uncharacterized protein/Oil body-associated 1A 0.90 M8AUX2 Uncharacterized protein/caleosin 2 -0.91 0.88 Q6RUJ1 Glutamine synthetase 0.85 Q8H0B8 Cold regulated protein 0.89 Accessions and protein names given by Uniprot were indicated. Only...”
- “...( Table 1 ). Out of these 13 metabolic proteins, two were uncharacterized proteins (M8A2L5, M8ARL1), which nevertheless contained annotated domains. M8ARL1 has an oil body associated A1domain and M8A2L5 classified in water stress induced proteins. The 11 remaining AGs have an annotation. M7ZQM3 is a...”
LOC103844119, XP_009119147 oil body-associated protein 1A from Brassica rapa
Aligns to 37:204 / 241 (69.7%), covers 99.4% of PF06884, 249.0 bits
- A proteomic analysis of seeds from Bt-transgenic Brassica napus and hybrids with wild B. juncea
Liu, Scientific reports 2015 - “...3/5 28/4.9 23/4.9 cell defense & rescue stress response 59 L 0.2 PREDICTED: uncharacterized protein LOC103844119 XP_009119147 144 18 3/3 30/6.1 27/5.8 unknown unknown Spot ID is the spot number shown in Fig. 3 ; accumulation pattern indicates the spot whose abundance is higher (H) or...”
- “...12 2/3 42/8.1 22/5.8 cell defense & rescue detoxification 59 L 0.4 PREDICTED: uncharacterized protein LOC103844119 XP_009119147 144 18 3/3 30/6.1 27/5.8 unknown unknown Spot ID is the spot number shown in Fig. 4 ; accumulation pattern indicates the spot whose abundance is higher (H) or...”
- “...28/4.9 23/4.9 cell defense & rescue stress response 59 L 0.2 PREDICTED: uncharacterized protein LOC103844119 XP_009119147 144 18 3/3 30/6.1 27/5.8 unknown unknown Spot ID is the spot number shown in Fig. 3 ; accumulation pattern indicates the spot whose abundance is higher (H) or lower...”
- “...2/3 42/8.1 22/5.8 cell defense & rescue detoxification 59 L 0.4 PREDICTED: uncharacterized protein LOC103844119 XP_009119147 144 18 3/3 30/6.1 27/5.8 unknown unknown Spot ID is the spot number shown in Fig. 4 ; accumulation pattern indicates the spot whose abundance is higher (H) or lower...”
LOC104224147 uncharacterized protein LOC104224147 from Nicotiana sylvestris
Aligns to 34:201 / 238 (70.6%), covers 99.4% of PF06884, 246.8 bits
- Retarded germination of Nicotiana tabacum seeds following insertion of exogenous DNA mimics the seed persistent behavior
Onelli, PloS one 2017 - “...N . sylvestris 18/29 54 206 1180280* & 2738193* 2602751 & 934 PREDICTED: uncharacterized protein LOC104224147 gi|698568389 N . sylvestris 18/42 75 190 3888543* & 8829824* 104342910 & 1366 PREDICTED: MLP-like protein 423 gi|697098884 N . tomentosiformis 7/11 13 central fragment 79 6624381* & 86943214* 67014613...”
- “...transgenic tobacco seeds, such as the MPL-like protein, Methyonil tRNA formyltransferase and an uncharacterized protein LOC104224147, were less characterized ( Table 2 ; Figs 7 and 8 , red bold spots). The MPL-like protein is a low-molecular-weight polypeptide called a major latex protein (MLP) which is...”
Q9ZNS9 Embryo-specific protein from Oryza sativa subsp. indica
Aligns to 32:199 / 238 (70.6%), covers 99.4% of PF06884, 244.7 bits
STM1561 putative outer membrane or secreted lipoprotein from Salmonella typhimurium LT2
STM14_1884 OBAP family protein from Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
Aligns to 50:217 / 261 (64.4%), covers 98.2% of PF06884, 242.7 bits
- Inorganic Polyphosphate Is Essential for Salmonella Typhimurium Virulence and Survival in Dictyostelium discoideum
Varas, Frontiers in cellular and infection microbiology 2018 - “...STM1290 gapA Glyceraldehyde-3-phosphate dehydrogenase STM14_1590 STM1310 nadE NAD synthetase STM14_1770 STM1468 fumA Fumarase A STM14_1884 STM1561 Putative lipoprotein STM14_2183 STM1806 nhaB Sodium/proton antiporter STM14_2303 STM1894 ruvB Holliday junction DNA helicase B STM14_2313 Hypothetical protein STM14_2383 STM1963 amyA Cytoplasmic alpha-amylase STM14_2395 STM1974 fliK Flagellar hook-length control protein...”
- Coordinated regulation of virulence during systemic infection of Salmonella enterica serovar Typhimurium
Yoon, PLoS pathogens 2009 - “...STM0307, yaiA , STM0972, STM1029, pagD , STM1276, osmE , STM1485, STM1540, pqaA , STM1553, STM1561, STM1600, ugtL , yncJ , STM1630, ycjE , osmB , yciE , STM1864, STM1941, STM2138, STM2139, STM2242, STM2245, STM2287, pagK , STM2778, STM2779, STM3156, yhcO , STM3527, fidL , lpxO...”
- Rcs signalling-activated transcription of rcsA induces strong anti-sense transcription of upstream fliPQR flagellar genes from a weak intergenic promoter: regulatory roles for the anti-sense transcript in virulence and motility
Wang, Molecular microbiology 2009 - “...(STM0951) 2.7 0.9 ssrA,B ( ssrA ) 1.62.6 0.20.6 STM1273 3.4 0.2 Others negatively regulated STM1561 2.4 0.5 cadB 36.5 7.0 STM1633 (STM1633) 2.3 0.4 cdd 8.4 1.5 STM1638 7.3 2.0 fabB 2.5 0.1 STM4071 5.3 0.8 ppk ( ppk ) 2.4 0.3 STM4239, yjbJ (...”
- Salmonella serovar identification using PCR-based detection of gene presence and absence
Arrach, Journal of clinical microbiology 2008 - “...STM1537, STM1540, STM1543, STM1554, STM1557, STM1559, STM1561, STM1577, STM1582, STM1614, STM1615, STM1625, STM1630, STM1634, STM1637, STM1670, STM1675,...”
- Inorganic Polyphosphate Is Essential for Salmonella Typhimurium Virulence and Survival in Dictyostelium discoideum
Varas, Frontiers in cellular and infection microbiology 2018 - “...STM14_1565 STM1290 gapA Glyceraldehyde-3-phosphate dehydrogenase STM14_1590 STM1310 nadE NAD synthetase STM14_1770 STM1468 fumA Fumarase A STM14_1884 STM1561 Putative lipoprotein STM14_2183 STM1806 nhaB Sodium/proton antiporter STM14_2303 STM1894 ruvB Holliday junction DNA helicase B STM14_2313 Hypothetical protein STM14_2383 STM1963 amyA Cytoplasmic alpha-amylase STM14_2395 STM1974 fliK Flagellar hook-length control...”
t1474 putative secreted protein from Salmonella enterica subsp. enterica serovar Typhi Ty2
STY1502 putative secreted protein from Salmonella enterica subsp. enterica serovar Typhi str. CT18
Aligns to 50:217 / 261 (64.4%), covers 98.2% of PF06884, 242.7 bits
LOC8073213 oil body-associated protein 1A from Sorghum bicolor
Aligns to 32:199 / 238 (70.6%), covers 99.4% of PF06884, 242.7 bits
F2DJC5 Predicted protein from Hordeum vulgare subsp. vulgare
Aligns to 32:199 / 236 (71.2%), covers 99.4% of PF06884, 241.8 bits
- Identification of the Genetic Basis of Response to De-Acclimation in Winter Barley
Wójcik-Jagła, International journal of molecular sciences 2021 - “...HORVU5HR1G016810 A0A287QGT4 N/A HVA22-like protein HVA22-like protein e [ Aegilops tauschii subsp. tauschii ] HORVU5HR1G069360 F2DJC5 N/A Predicted protein oil body-associated protein 1A [ Brachypodium distachyon ] HORVU6HR1G049490 A0A287KZ68 N/A Unknown function protein putative protein 137 [ Sorghum arundinaceum ] HORVU6HR1G060020 M0Z5W3 N/A BRO1 domain-containing protein...”
OBP1A_MAIZE / B4FFZ9 Oil body-associated protein 1A from Zea mays (Maize) (see paper)
LOC100193701 oil body-associated protein 1A from Zea mays
Aligns to 32:199 / 238 (70.6%), covers 99.4% of PF06884, 241.5 bits
- Proteomic identification of genes associated with maize grain-filling rate
Jin, PloS one 2013 - “...uncharacterized LOC100502218 Defense 20000/22859 4.6/5.7 5 69.1 98.59 69 30 3.20E08 82 gi|212722552 hypothetical protein LOC100193701 Cellular biogenesis 43000/26549 6.3/5.9 2 52.39 99.97 52 13 3.90E81 a Number of identified differentially expressed protein spots on each 2-D map. Preferentially accumulated proteins: more than 2-fold changes; t...”
- Combining P and Zn fertilization to enhance yield and grain quality in maize grown on Mediterranean soils
Sánchez-Rodríguez, Scientific reports 2021 - “...0.0022 0.26 3.31 1.34 A0A1D6LER3 Glyceraldehyde-3-phosphate dehydrogenase 23 2381.58 79.94 1.02 0.0363 0.45 2.98 1.27 B4FFZ9 Oil body-associated protein 1A 12 882.02 63.87 0.83 0.0395 0.50 2.36 1.08 K7V794 Enolase 1 31 2874.43 80.49 0.75 0.0386 0.51 3.10 1.46 K7VJF3 Heat shock 70kDa protein 5 46...”
- Quantitative Label-Free Comparison of the Metabolic Protein Fraction in Old and Modern Italian Wheat Genotypes by a Shotgun Approach.
Di, Molecules (Basel, Switzerland) 2021 - “...0.12 4.84 10 11 69.40 7 6 0.12 3.03 10 8 109.29 7 6 Storage B4FFZ9 OBP1A Maize Oil body-associated protein 1A 4.75 7.00 10 5 64.98 5 5 9.73 3.64 10 14 88.47 4 4 Others Q9ST58 SPZ1C Wheat Serpin-Z1C 0.40 1.55 10 7 48.73...”
- “...87.16 2 2 2.32 2.13 10 5 51.24 2 2 Y (Timilia) Defense/Stress Related Proteins B4FFZ9 OBP1A Maize Oil body-associated protein 1A 4.60 4.17 10 9 97.23 5 5 9.09 5.73 10 9 106.51 4 4 Others P82977 ICIW Wheat Subtilisin-chymotrypsin inhibitor WSCI 6.61 7.87 10...”
- Allergen false-detection using official bioinformatic algorithms.
Herman, GM crops & food 2020 - “...Q41881 1 2 P60128 M1D7J7 B6UH99 P12355 M1AYK4 P80639 A0A0K9QP00 1 Q93X17 B6UH67 P12359 M0ZNV9 B4FFZ9 P00455 Q00782 B4FFK9 2 P12353 M1BPE5 E9JVD4 Q41385 Q9AWA5 P29518 P11402 1 Q3HRY7 1 B6SL97 P13788 P37829 Q01526 O20252 1 Q9M4G5 25 B4FUH2 P17353 Q9M4G4 B4FPL1 P22418 C6F3B7 2 B6UGJ4...”
- 2-DE-based proteomic analysis of protein changes associated with etiolated mesocotyl growth in Zea mays
Niu, BMC genomics 2019 - “...mRNA modification 72 B6SIF0 Glycine-rich RNA-binding protein 2 70,78 A0A1D6MXZ7 Glycine-rich RNA-binding protein 3 79 B4FFZ9 Oil body-associated protein 1A Storage protein 80,86 B6SGN7, A0A1D6JQ00 Embryonic protein DC-8 87 A2SZW8 1-Cys peroxiredoxin PER1 Cell redox homeostasis Type II DAPs 2,3 A0A1D6GIG4 C0PKT5 Tubulin chain Structural constituent...”
C6SWV3 Uncharacterized protein from Glycine max
Aligns to 41:210 / 245 (69.4%), covers 98.8% of PF06884, 229.2 bits
- Subcellular Proteomics to Understand Promotive Effect of Plant-Derived Smoke Solution on Soybean Root
Murashita, Proteomes 2021 - “...hand, four late embryogenesis-abundant (LEA) proteins (Q9XET0, I1L957, I1M3M9, and I1LE41), importin (I1MDN4), histone acetyltransferase (C6SWV3) significantly decreased by plant-derived smoke solution compared to control ( Table 1 ). 3.4. ATPase Abundance and ATP Contents in Soybean Treated with Plant-Derived Smoke Based on proteomic results, some...”
- “...Late embryogenesis abundant protein D-34 10 0.010 10 I1LE41 Seed maturation protein 7 0.010 11 C6SWV3 Histone acetyltransferase 4 0.010 12 I1MDN4 Importin N-terminal domain-containing protein 2 0.010...”
LOC106386443 oil body-associated protein 2A from Brassica napus
Aligns to 42:211 / 246 (69.1%), covers 98.8% of PF06884, 229.0 bits
- Digestion dynamics in broilers fed rapeseed meal
Recoules, Scientific reports 2019 - “...dismutase [Mn] 2, mitochondrial (XP_013663290.1) Sod_Fe_C super family (cl27368)/Detoxification of superoxide radicals Crop Uncharacterized protein LOC106386443 (XP_013681750.1) Protein of unknown function (DUF1264) (pfam06884) Crop Phylloplanin-like (XP_013663791.1) Pollen_Ole_e_I super family (cl03128) All except Ile BnaC01g26830D (CDY17559.1) Classical (c) SDR, subgroup 1 (cd05355) Crop Acyl-binding/lipid-transfer protein isoform III...”
B4FFK9 Oil body-associated protein 2A from Zea mays
Aligns to 47:216 / 252 (67.5%), covers 98.8% of PF06884, 228.1 bits
- Allergen false-detection using official bioinformatic algorithms.
Herman, GM crops & food 2020 - “...P60128 M1D7J7 B6UH99 P12355 M1AYK4 P80639 A0A0K9QP00 1 Q93X17 B6UH67 P12359 M0ZNV9 B4FFZ9 P00455 Q00782 B4FFK9 2 P12353 M1BPE5 E9JVD4 Q41385 Q9AWA5 P29518 P11402 1 Q3HRY7 1 B6SL97 P13788 P37829 Q01526 O20252 1 Q9M4G5 25 B4FUH2 P17353 Q9M4G4 B4FPL1 P22418 C6F3B7 2 B6UGJ4 A1XIR6 P33191 7...”
- Identification of B6T173 (ZmPrx35) as the prevailing peroxidase in highly insect-resistant maize (Zea mays, p84C3) kernels by activity-directed purification
López-Castillo, Frontiers in plant science 2015 - “...ms activation time. Data acquisition was controlled by Xcalibur 2.0.7 software (Thermo Fisher Scientific). Recombinant B4FFK9 Production For the recombinant production of B4FFK9 protein, a synthetic and codon- optimized version of the gene was designed (GenScript, Piscataway, NJ, USA). This gene was cloned into the pGEX-6P-1...”
- “...with Uniprot entry K4F957, a late embryogenesis abundant protein from Oryza sativa subsp. japonica (Rice). B4FFK9 displays 81 % identity with Uniprot entry Q94J20, a lipoprotein-like Oryza sativa subsp. japonica (Rice) and 63 % identity with the secreted Z. mays (Maize) proteins B6UI56 and K7V532. B4FFK9...”
AT5G45690 hypothetical protein from Arabidopsis thaliana
Q941A4 Oil body-associated protein 2A from Arabidopsis thaliana
Aligns to 43:212 / 247 (68.8%), covers 98.8% of PF06884, 227.2 bits
- Arabidopsis-expressing lysine-null SUMO1 reveals a non-essential role for secondary SUMO modifications in plants
Rytz, Plant direct 2023 (no snippet) - Transcriptional mechanisms associated with seed dormancy and dormancy loss in the gibberellin-insensitive sly1-2 mutant of Arabidopsis thaliana
Nelson, PloS one 2017 - “...in the opposite direction. For example, HSFA9 , GASA2 , At2g34740 , RAB28 , and At5g45690 , were GID1b-OE -UP but down-regulated in 12h sly1-2 ARvsD, 12h WTvsD, and 24 h L er ARvsD. Additionally, GASA4 and AHb1 ( A rabidopsis nonsymbiotic H emoglo b in1...”
- Biology in the Dry Seed: Transcriptome Changes Associated with Dry Seed Dormancy and Dormancy Loss in the Arabidopsis GA-Insensitive sleepy1-2 Mutant
Nelson, Frontiers in plant science 2017 - “...1.34 At4g09610 GASA2 1.29 At3g45970 EXPL1 1.01 At2g34740 A PP2C 0.97 At3g22490 A LEA 0.91 At5g45690 Unknown protein 0.83 At2g46240 BAG6 -2.13 -2.69 -3.19 At2g46250 Myosin heavy chain related -1.31 -1.80 -3.39 At1g17430 / hydrolase fold family -1.10 At5g01740 NTF2 family -1.07 At5g48850 SDI1 -1.06 At5g58860...”
- Physiological and proteomic analyses on artificially aged Brassica napus seed
Yin, Frontiers in plant science 2015 - “...protein 79 63 Development D41 DY002558 AT2G42560 LEA domain-containing protein 172 55 Unassigned D58 DY001351 AT5G45690 Protein of unknown function (DUF1264) 369 82 Unassigned D74 DY001490 AT3G22640 Cupin family protein 185 68 Development D71 DY002554 AT2G42560 LEA domain-containing protein 78.6 47 Unassigned D78 DY002558 AT2G42560 LEA...”
- “...2B 145 84 Stress U44 EV179242 AT3G53040 LEA domain-containing protein 117 52 Development U48 CX278338 AT5G45690 Protein of unknown function (DUF1264) 277 82 Unassigned Figure 5 Protein functional categories of the differentially displayed proteins . Functional categorization was conducted according to MapMan (Thimm et al., 2004...”
- WRKY6 restricts Piriformospora indica-stimulated and phosphate-induced root development in Arabidopsis
Bakshi, BMC plant biology 2015 - “...3.9 33.99 At5g07930 MCT2 (mei2 C-terminal RRM only like 2 protein) 4.2 2.8 4.2 35.2 At5g45690 unknown protein 4.0 4.2 2.9 35.1 At4g33820 glycosyl hydrolase family 10 protein 4.2 4.4 2.5 27.3.24 At5g51860 AGL72 (MADS-box protein) 3.9 4.0 3.2 27.3.7 At3g21880 zinc finger (B-box type) protein...”
- Toward the identification and regulation of the Arabidopsis thaliana ABI3 regulon
Mönke, Nucleic acids research 2012 - “...AT4G36600 LEA TP AT1G54860 Unknown CTPA AT2G18340 LEA TP AT4G18920 Unknown CTP AT1G73190 Alpha-TIP CTPA AT5G45690 Unknown CTP AT1G17810 Beta-TIP CTA AT3G15280 Unknown CTA AT5G07190 ATS3, seed gene3 TP AT5G07330 Unknown CT AT4G26740 ATS1,seed gene1 CTPA AT1G02700 Unknown CT AT4G09610 GASA2 CP AT1G05510 Unknown CT AT4G09600...”
- The CHD3 remodeler PICKLE promotes trimethylation of histone H3 lysine 27
Zhang, The Journal of biological chemistry 2008 - “...AGI At1g05510 At1g17810 At1g21520 At1g28300 At3g26740 At4g04630 At4g09610 At5g45690 At5g63750 Gene Identified by GFWER(k)? -TIP LEC2 CCL GASA2 Yes Yes Yes No...”
- Transgenic increases in seed oil content are associated with the differential expression of novel Brassica-specific transcripts
Sharma, BMC genomics 2008 - “...Down EE541726 At1g74370 Zinc finger (C3HC4-type RING finger) family protein 2.5 2.4 1.7 Down CN726378 At5g45690 Similar to unknown protein ND 2.3 1.7 Down EE548935 Atmg00910 Hypothetical mitochondrial protein ND 2.0 ND Down EE549536 At5g26260 Meprin and TRAF homology domain-containing protein 2.9 4.8 ND Up DY009332...”
- More
- Proteomic and selected metabolite analysis of grape berry tissues under well-watered and water-deficit stress conditions.
Grimplet, Proteomics 2009 - “...399 25 Unknown CAB02653 7301 0.13 TC57576 21011 31315 5.24 5.84 5+2 60.8 12 Unknown Q941A4 6206 0.56 (7.6) TC57394 26532 30143 5.94 5.76 4+1 107 15 Embryo-specific protein Q9ZNS9 Water-status regulated protein WW/DS 7203 (4.17) TC58896 26032 28706 6.24 5.88 8+3 123 29 Vacuolar H...”
Q94J20 Os01g0749000 protein from Oryza sativa subsp. japonica
Aligns to 47:216 / 252 (67.5%), covers 98.8% of PF06884, 226.3 bits
AT4G18920 hypothetical protein from Arabidopsis thaliana
Aligns to 43:212 / 247 (68.8%), covers 98.8% of PF06884, 220.9 bits
- Toward the identification and regulation of the Arabidopsis thaliana ABI3 regulon
Mönke, Nucleic acids research 2012 - “...LEA TP AT1G04560 AWPM19 family CP AT4G36600 LEA TP AT1G54860 Unknown CTPA AT2G18340 LEA TP AT4G18920 Unknown CTP AT1G73190 Alpha-TIP CTPA AT5G45690 Unknown CTP AT1G17810 Beta-TIP CTA AT3G15280 Unknown CTA AT5G07190 ATS3, seed gene3 TP AT5G07330 Unknown CT AT4G26740 ATS1,seed gene1 CTPA AT1G02700 Unknown CT AT4G09610...”
AT1G29680 hypothetical protein from Arabidopsis thaliana
Aligns to 33:202 / 237 (71.7%), covers 98.2% of PF06884, 220.1 bits
- Toward the identification and regulation of the Arabidopsis thaliana ABI3 regulon
Mönke, Nucleic acids research 2012 - “...AT2G23110 Unknown TP AT3G58450 Stress protein TP AT5G16460 Unknown TP AT4G25580 Stress protein CAP160 TP AT1G29680 Unknown TP AT3G56350 Superoxide dismutase TP AT3G63040 Unknown TP AT4G16160 ATEOP16 CTPA AT1G47980 Unknown TP AT4G26590 ATOPT5 CT AT5G24130 Unknown TP Putative functions were extracted from TAIR8. Methods used C:...”
B6UI56 Oil body-associated protein 2B from Zea mays
Aligns to 44:214 / 250 (68.4%), covers 94.2% of PF06884, 211.1 bits
Afu5g12830 DUF1264 domain protein from Aspergillus fumigatus Af293
Aligns to 36:190 / 202 (76.7%), covers 78.9% of PF06884, 196.4 bits
Or search for genetic data about PF06884 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory