Family Search for PF06972 (GIP1_N)

April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.

Running HMMer for PF06972

PF06972 hits 10 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

D7TZU6 GBF-interacting protein 1 N-terminal domain-containing protein from Vitis vinifera
Aligns to 14:73 / 809 (7.4%), covers 98.3% of PF06972, 111.6 bits

• Grape ASR-Silencing Sways Nuclear Proteome, Histone Marks and Interplay of Intrinsically Disordered Proteins
  Atanassov, International journal of molecular sciences 2022
  • “...VIT_05s0094g00440.t01 Sas10/U3 ribonucleoprotein family protein 1.42 D7SII5 (D7SII5_VITVI) CBI15296.3 VIT_17s0000g05450.t01 Early flowering 5 protein 1.43 D7TZU6 (D7TZU6_VITVI) CBI35892.3 VIT_09s0002g01530.t01 GBF-interacting protein 1-like isoform X1 1.52 F6HH48 (F6HH48_VITVI) CBI28116.3 VIT_11s0016g04390.t01 Nucleolar protein dao-5-like 1.54 F6HFZ8 (F6HFZ8_VITVI) CBI27460.3 VIT_01s0010g01440.t01 Transcription elongation regulator 1-like 1.57 D7TTQ2 (D7TTQ2_VITVI) CBI33817.3 VIT_02s0012g02250.t01...”

AT4G18150 hypothetical protein from Arabidopsis thaliana
Aligns to 15:73 / 758 (7.8%), covers 100.0% of PF06972, 107.1 bits

• The DME demethylase regulates sporophyte gene expression, cell proliferation, differentiation, and meristem resurrection
  Kim, Proceedings of the National Academy of Sciences of the United States of America 2021
  • “...endosperm, two genes were also significantly down-regulated in dme-2 seedling mutant sporophytic tissue (AT1G77960 and AT4G18150), indicating that expression of these genes is shared between the central cell and the sporophyte ( SI Appendix , Table S2 ). Of the remaining five genes, three did not...”
• Induction of epigenetic variation in Arabidopsis by over-expression of DNA METHYLTRANSFERASE1 (MET1)
  Brocklehurst, PloS one 2018
  • “...protein A1- -4.889 3.90E-26 AT3G53910 A1+ -4.682 3.88E-18 genic Malate dehydrogenase-like protein A1- -3.701 8.64E-14 AT4G18150 A1+ -5.660 7.99E-34 genic Serine/Threonine-kinase, putative A1- -5.388 3.45E-37 AT5G15360 A1+ -4.214 6.81E-14 genic Transmembrane protein A1- -6.021 7.80E-51 AT5G26270 A1+ -3.470 2.04E-09 genic Transmembrane protein A1- -5.411 4.71E-64 AT5G35375...”
• Transmission of epi-alleles with MET1-dependent dense methylation in Arabidopsis thaliana
  Watson, PloS one 2014
  • “...database [22] , At1g53480 encodes an unknown protein, At3g01345 a protein with hydrolase activity and At4g18150 a kinase-related protein. As for At4g15242 , dense methylation in the three genes was retained in a drm1/2 mutant but eliminated in a met1 mutant ( Figure S2 ). All...”
  • “...[18] , revealed epi-alleles of all four genes represented among ecotypes ( Figure 4 ). At4g18150 epi-alleles were either fully methylated or unmethylated but for the other three genes, epi-alleles with different methylation levels could be found. Alignment of these methylation patterns for expressed and silenced...”

AT1G29370 kinase-related from Arabidopsis thaliana
Aligns to 17:75 / 831 (7.1%), covers 100.0% of PF06972, 105.3 bits

• An easy-to-use primer design tool to address paralogous loci and T-DNA insertion sites in the genome of Arabidopsis thaliana
  Huep, Plant methods 2014
  • “...742E06. In line 583H04, At1g29350 was identified as a wrong prediction and the insertion in At1g29370 was confirmed. In line 742E06, At2g38210 was the wrong prediction and At2g38230 was confirmed. Access to the easy-to-use primer design tool In order to offer public access to the primer...”

AT1G29350 hypothetical protein from Arabidopsis thaliana
Aligns to 17:75 / 831 (7.1%), covers 100.0% of PF06972, 105.3 bits

• The EXO70 inhibitor Endosidin2 alters plasma membrane protein composition in Arabidopsis roots
  Li, Frontiers in plant science 2023
  • “...0 NO AT3G13460 EVOLUTIONARILY CONSERVED C-TERMINAL REGION 2 ECT2 5.27 mRNA destabilization (GO:0061157) 0 NO AT1G29350 RNA polymerase II degradation factor-like protein (DUF1296) 5.11 regulation of nitrogen compound metabolic process (GO:0051171) 0 NO AT2G38540 LIPID TRANSFER PROTEIN 1 ATLTP1 5.09 lipid transport (GO:0006869) 0 YES AT4G22670...”
• Differential Alternative Splicing Genes and Isoform Regulation Networks of Rapeseed (Brassica napus L.) Infected with Sclerotinia sclerotiorum
  Ma, Genes 2020
  • “...BnaCnng45130D AT1G02305 78.82 Cysteine proteinases superfamily protein BnaC05g05550D AT1G07890 F24B9.2 92.00 Ascorbate peroxidase 1 BnaC05g22390D AT1G29350 74.24 RNA polymerase II degradation factor-like protein (DUF1296) BnaA06n0344 AT1G48840 50.79 Plant protein of unknown function (DUF639) BnaC06g04140D AT1G50910 79.28 Hypothetical protein BnaA02g12910D AT1G67170 69.08 Sarcolemmal membrane-associated protein BnaA07g24840D AT1G68010...”
• An easy-to-use primer design tool to address paralogous loci and T-DNA insertion sites in the genome of Arabidopsis thaliana
  Huep, Plant methods 2014
  • “...locus in these lines. Examples are the GABI-Kat lines 583H04 and 742E06. In line 583H04, At1g29350 was identified as a wrong prediction and the insertion in At1g29370 was confirmed. In line 742E06, At2g38210 was the wrong prediction and At2g38230 was confirmed. Access to the easy-to-use primer...”
• Meta-analysis of the expression profiles of the Arabidopsis ESCRT machinery
  Richardson, Plant signaling & behavior 2011
  • “...activity AT3G04960 Molecular chaperone, heat shock protein AT1G29350 Kinase-related protein of unknown function AT1G76430 Pht1;9, a member of the Pht1 family...”

AT3G07660 hypothetical protein from Arabidopsis thaliana
Aligns to 10:70 / 841 (7.3%), covers 100.0% of PF06972, 103.3 bits

• The EXO70 inhibitor Endosidin2 alters plasma membrane protein composition in Arabidopsis roots
  Li, Frontiers in plant science 2023
  • “...0 NO AT4G03110 RNA-BINDING PROTEIN-DEFENSE RELATED 1 RBP-DR1 6.78 plant-type hypersensitive response (GO:0009626) 0 NO AT3G07660 flocculation protein (DUF1296) 6.37 biological_process_unknown (GO:0008150) 0 NO AT5G56670 Ribosomal protein S30 family protein RPS30C 5.57 translation (GO:0006412) 0 NO AT4G36960 RNA-binding (RRM/RBD/RNP motifs) family protein 5.46 organic cyclic compound...”
• Close split of sorghum and maize genome progenitors
  Swigonová, Genome research 2004
  • “...sequence similarity to unknown proteins in Arabidopsis (pg1: At3g07660, e < 1E-30; pg2: At5g12080, e < 1E-100; pg3: At5g22090, Figure 1 Chromosomal location and...”

AT3G13990 hypothetical protein from Arabidopsis thaliana
Aligns to 15:74 / 848 (7.1%), covers 96.7% of PF06972, 100.3 bits

• An integrative Study Showing the Adaptation to Sub-Optimal Growth Conditions of Natural Populations of Arabidopsis thaliana: A Focus on Cell Wall Changes
  Duruflé, Cells 2020
  • “...well-represented: blue copper binding proteins (AT5G15350, AtEN22; AT4G31840, AtEN13; AT4G12880, AtEN20) and multicopper oxidases (AT5G21100; AT3G13990, AtSKS11; AT1G41830, AtSKS6). As mentioned above, AtEN22 and AtSKS6 are the two candidates common to rosettes and floral stems. Regarding proteins possibly involved in lipid metabolism, AtLTPg4 ( AT1G27950 )...”
  • “...+ + AT4G23820 PAC GH28 (polygalacturonase) + + AT5G06860 ID PGIP1 (LRR domains) + + AT3G13990 OR multicopper oxidase (AtSKS11, homologous to SKU5) + + AT5G20230 OR stellacyanin AtSTC1, BCB (blue copper binding protein) + + AT1G71695 OR class III peroxidase (AtPrx12) + + AT2G39850 P...”
• Circular and Micro RNAs from Arabidopsis thaliana Flowers Are Simultaneously Isolated from AGO-IP Libraries
  Frydrych, Plants (Basel, Switzerland) 2019
  • “...from circ_At3g1399080 was purified and submitted to Sanger sequencing. The sequence resulted from back-splicing of At3g13990 exon 4 (E4) and exon 2 (E2) was obtained using the Primer circular Forward (PcF) ( Figure 3 ). This result was also corroborated by 34 reads, present in AGO-IP...”
  • “...* 1 118 4 DAH-IP At3g01800 circ_At3g01800 Ribosome recycling factor exonic 1 68 4 DAH-IP At3g13990 ** circ_At3g13990 Kinase-related protein (DUF1296) exonic 3 349 3 DAH-IP At5g27720 ** circ_At5g27720 Small nuclear ribonucleoprotein family protein exonic 4 321 5 * circRNA originated from an imperfect back-splicing; **...”
• Expression and integrated network analyses revealed functional divergence of NHX-type Na⁺/H⁺ exchanger genes in poplar
  Tian, Scientific reports 2017
  • “...PtNHX8 RNI-like Potri.006G105400 AT5G01720 Involved in ubiquitin-dependent protein catabolic process. PtNHX7 and PtNHX8 DUF1296 Potri.003G063300 AT3G13990 Kinase-related protein of unknown function (DUF1296) PtNHX7 and PtNHX8 We then performed the GO enrichment analysis of the co-expressed genes to reveal their potential function. Among the genes co-expressed with...”
• Systematic discovery of novel eukaryotic transcriptional regulators using sequence homology independent prediction
  Bossi, BMC genomics 2017
  • “...from pDEST22 and cloned into pENTR-SD (Life Technologies). The entry vectors containing the genes AT3G29180, AT3G13990, AT4G28300, AT5G46780, AT1G78310, AT2G33350, AT1G04500, AT5G41380, AT5G59990 and AT4G00130 were obtained from ABRC. Dr. Enrico Magnani provided the entry vector containing the ATHB1 gene (INRA, Centre de Versailles-Grignon, France) and...”
• Partial Activation of SA- and JA-Defensive Pathways in Strawberry upon Colletotrichum acutatum Interaction
  Amil-Ruiz, Frontiers in plant science 2016
  • “...70 protein family 1.81 3.95E-02 M26H5 gene18624 AT1G01090 Pyruvate dehydrogenase alpha 1.78 3.95E-02 M11B2 gene07537 AT3G13990 Kinase-related protein 1.76 3.95E-02 Genes were considered as differentially expressed if they fulfilled a FDR < 0.05 after a SAM test analysis and the fold-change was higher that 1.75-fold between...”
• A versatile mass spectrometry-based method to both identify kinase client-relationships and characterize signaling network topology
  Ahsan, Journal of proteome research 2013
  • “...Cytochrome c CtaG (At1g02410) CHUP1 protein (At3g25690) Cytochrome P450 (At3g30290) RSZp22 splicing factor (At2g24590) DUF1296 (At3g13990) FPA protein (At2g43410) CAP160 protein (At4g25580) Aquaporin PIP2-3 (At2g37180) Chaperonin CPN60 (At3g13860) DUF3511 (At3g13910) GYF domain-contain protein (At1g24300) Protein uncharacterized (At3g50370) bZIP_1 transcription factor (At4g38900) PPR containing protein (At5g43830) Transmembrane...”

K7UTH3 GBF-interacting protein 1 from Zea mays
Aligns to 15:73 / 856 (6.9%), covers 100.0% of PF06972, 99.7 bits

• Quantitative Proteomic Analyses Identify ABA-Related Proteins and Signal Pathways in Maize Leaves under Drought Conditions
  Zhao, Frontiers in plant science 2016
  • “...0.964 0.956 0.978 0.634 0.000 0.966 0.314 0.000 Down-regulated by drought in an ABA-dependent way K7UTH3 Putative DUF1296 domain containing family protein 1.669 1.634 1.644 1.083 1.075 1.097 1.649 0.000 1.085 0.142 0.000 Up-regulated by drought in an ABA-dependent way K7UUC8 Uncharacterized protein (Fragment) 0.671 0.636...”

GIP1_ARATH / Q8VZS6 GBF-interacting protein 1 from Arabidopsis thaliana (Mouse-ear cress) (see 3 papers)
AT3G13222 GIP1 (GBF-INTERACTING PROTEIN 1); unfolded protein binding from Arabidopsis thaliana
NP_187929 GBF-interacting protein 1 from Arabidopsis thaliana
Aligns to 14:74 / 567 (10.8%), covers 100.0% of PF06972, 98.7 bits

• function: Plant specific protein that enhances G-box-binding factor (GBF) DNA binding activity. May function as a nuclear chaperone or lever and regulate the multimeric state of GBFs. May contribute to bZIP-mediated gene regulation. Is able to refold denatured rhodanese in vitro (PubMed:16117846, PubMed:25387999). Reduces DNA-binding activity of BZIP16, BZIP68 and GBF1 under non-reducing conditions through direct physical interaction. Acts as a negative co-regulator in red and blue light-mediated hypocotyl elongation. Functions to promote hypocotyl elongation during the early stages of seedling development by regulating the repression effect by BZIP16 and the activation effect by BZIP68 and GBF1 on LHCB2.4 expression (PubMed:25387999). Enhances transcriptional activity of LBD18 in the EXP14 promoter. May act as a transcriptional coactivator of LBD18 (PubMed:24484953).
  subunit: Monomer, homodimer, homooligomer. Under non-reducing conditions, predominantly present in high molecular weight forms, but predominates in low molecular weight monomers under reducing conditions (PubMed:25387999). Interacts with BZIP16, BZIP68 and GBF1 (PubMed:25387999). Interacts with LBD18 (PubMed:24484953).
• The EXO70 inhibitor Endosidin2 alters plasma membrane protein composition in Arabidopsis roots
  Li, Frontiers in plant science 2023
  • “...AT4G36960 RNA-binding (RRM/RBD/RNP motifs) family protein 5.46 organic cyclic compound catabolic process (GO:1901361) 0 NO AT3G13222 GBF-INTERACTING PROTEIN 1 GIP1 5.31 positive regulation of DNA binding (GO:0043388) 0 NO AT3G13460 EVOLUTIONARILY CONSERVED C-TERMINAL REGION 2 ECT2 5.27 mRNA destabilization (GO:0061157) 0 NO AT1G29350 RNA polymerase II...”
• Selective autophagy: adding precision in plant immunity
  Leong, Essays in biochemistry 2022
  • “...Protein DA1-related 1 DAR1 553 AT4G36860 UIM/DA1 + Q8VZS6 GIP1_ARATH GBF-interacting protein 1 GIP1 567 AT3G13222 UBA-like Q8VYC8 RIN2_ARATH E3 ubiquitin protein ligase RIN2 (EC 2.3.2.27) (AMF receptor-like protein 1A) (RING-type E3 ubiquitin transferase RIN2) (RPM1-interacting protein 2) RIN2 578 AT4G25230 CUE Q8VWF1 SH3P2_ARATH SH3 domain-containing...”
• MGO3 and GIP1 act synergistically for the maintenance of centromeric cohesion.
  Batzenschlager, Nucleus (Austin, Tex.) 2017
  • GeneRIF: the contribution of both MGO3 and GIP1 to the regulation of centromeric cohesion in Arabidopsis
• GIP1 protein is a novel cofactor that regulates DNA-binding affinity of redox-regulated members of bZIP transcription factors involved in the early stages of Arabidopsis development.
  Shaikhali, Protoplasma 2015 (PubMed)
  • GeneRIF: GIP1 functions to promote hypocotyl elongation during the early stages of Arabidopsis seedling development.
• Arabidopsis MZT1 homologs GIP1 and GIP2 are essential for centromere architecture.
  Batzenschlager, Proceedings of the National Academy of Sciences of the United States of America 2015
  • GeneRIF: ascribe a central function to GIPs for the proper recruitment and/or stabilization of centromeric proteins essential in the specification of the centromere identity, as well as for centromeric cohesion in somatic cells
• GIP1 may act as a coactivator that enhances transcriptional activity of LBD18 in Arabidopsis.
  Lee, Journal of plant physiology 2014 (PubMed)
  • GeneRIF: GBF INTERACTING PROTEIN1 (GIP1) interacts with LBD18 in yeast and Arabidopsis protoplasts. Reverse-transcription-pcr analysis showed overlapping expression of GIP1 and LBD18 in roots, aerial parts, and rosette leaves of Arabidopsis.
• Identification of a novel small Arabidopsis protein interacting with gamma-tubulin complex protein 3.
  Janski, Cell biology international 2008 (PubMed)
  • GeneRIF: The possible role of this protein during the nucleation process is discussed
• Identification and characterization of GIP1, an Arabidopsis thaliana protein that enhances the DNA binding affinity and reduces the oligomeric state of G-box binding factors.
  Sehnke, Cell research 2005 (PubMed)
  • GeneRIF: GIP1 functions to enhance GBF DNA binding activity by acting as a potent nuclear chaperone or crowbar, and potentially regulates the multimeric state of GBFs, thereby contributing to bZIP-mediated gene regulation.
• Selective autophagy: adding precision in plant immunity
  Leong, Essays in biochemistry 2022
  • “...3) RIN3 577 AT5G51450 CUE Q8W4F0 DAR1_ARATH Protein DA1-related 1 DAR1 553 AT4G36860 UIM/DA1 + Q8VZS6 GIP1_ARATH GBF-interacting protein 1 GIP1 567 AT3G13222 UBA-like Q8VYC8 RIN2_ARATH E3 ubiquitin protein ligase RIN2 (EC 2.3.2.27) (AMF receptor-like protein 1A) (RING-type E3 ubiquitin transferase RIN2) (RPM1-interacting protein 2) RIN2...”

GRMZM2G130586 uncharacterized protein LOC103636139 from Zea mays
Aligns to 20:78 / 840 (7.0%), covers 100.0% of PF06972, 98.3 bits

• Genome wide association analysis for yield related traits in maize
  Zeng, BMC plant biology 2022
  • “...kinase NFP TBN 10_4247900 1.98E-06 9.44 GRMZM5G886547 Non-specific lipid-transfer protein 3 TBN 8_148198954 2.07E-06 9.40 GRMZM2G130586 Unknown TBN 8_139164894 4.92E-06 8.76 GRMZM2G046037 ubiquitin carboxyl-terminal hydrolase MINDY-2 TBN 3_160368430 7.87E-06 8.40 GRMZM2G129114 Nucleotide-diphospho-sugar transferase TBN 1_270000781 1.41E-05 7.97 GRMZM5G857351 translational activator GCN1 TBN 3_180017439 1.20E-05 8.09 GRMZM2G042295...”

GIP1L_ARATH / A4FVR1 GBF-interacting protein 1-like; Protein GIP1-like from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT1G55820 hypothetical protein from Arabidopsis thaliana
Aligns to 13:73 / 575 (10.6%), covers 100.0% of PF06972, 94.0 bits

• function: May act as a transcriptional coactivator of LOB domain- containing proteins.
• Selective autophagy: adding precision in plant immunity
  Leong, Essays in biochemistry 2022
  • “...WD40 F4HXZ1 BRO1_ARATH Vacuolar-sorting protein BRO1 (BRO domain-containing protein 1) (AtBRO1) BRO1 846 AT1G15130 BRO1 A4FVR1 GIP1L_ARATH GBF-interacting protein 1-like (Protein GIP1-like) GIP1L 575 AT1G55820 UBA-like A0A1P8AW60 A0A1P8AW60_ARATH Ubiquitin-associated (UBA)/TS-N domain-containing protein At1g04850 324 AT1G04850 UBA Q9SII9 DSK2A_ARATH Ubiquitin domain-containing protein DSK2a DSK2A 538 AT2G17190 UBA...”
• Selective autophagy: adding precision in plant immunity
  Leong, Essays in biochemistry 2022
  • “...1) (AtBRO1) BRO1 846 AT1G15130 BRO1 A4FVR1 GIP1L_ARATH GBF-interacting protein 1-like (Protein GIP1-like) GIP1L 575 AT1G55820 UBA-like A0A1P8AW60 A0A1P8AW60_ARATH Ubiquitin-associated (UBA)/TS-N domain-containing protein At1g04850 324 AT1G04850 UBA Q9SII9 DSK2A_ARATH Ubiquitin domain-containing protein DSK2a DSK2A 538 AT2G17190 UBA + Q9SII8 DSK2B_ARATH Ubiquitin domain-containing protein DSK2b DSK2B 551...”

Or search for genetic data about PF06972 in the Fitness Browser