Family Search for PF07030 (Phage_Mu_Gp36)

April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.

Running HMMer for PF07030

PF07030 hits 12 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

HI1508 conserved hypothetical protein from Haemophilus influenzae Rd KW20
P44230 Mu-like prophage FluMu protein gp36 from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Aligns to 4:127 / 141 (87.9%), covers 99.2% of PF07030, 142.9 bits

• Functional annotation of conserved hypothetical proteins from Haemophilus influenzae Rd KW20
  Shahbaaz, PloS one 2013
  • “...family domain protein 244. HP HI1505 950373 P44227 Mu-like prophageFluMu major head subunit 245. HP HI1508 950376 P44230 Mu-like prophage protein GP36 246. HP HI1509 950377 P44231 Mu-like prophageFluMu protein gp37 247. HP HI1510 950834 P44232 Mu-like prophageFluMu protein gp38 248. HP HI1512 950378 P44234 Mu-like...”
• Codon usage comparison of novel genes in clinical isolates of Haemophilus influenzae
  Gladitz, Nucleic acids research 2005
  • “...47 308 33.23 HP1 0 53.79 Conserved hypothetical protein (homol. to Mu-like phage protein gp36) HI1508 47 141 45.89 HP1 0 66.55 Conserved hypothetical protein (homol. to Mu-like phage protein gp37) HI1509 49 194 41.08 VC 6.2 69.66 H.influenzae predicted coding region HI1518 f(homol. to Mu-like...”
• Genomic analysis of the F3031 Brazilian purpuric fever clone of Haemophilus influenzae biogroup aegyptius by PCR-based subtractive hybridization
  Smoot, Infection and immunity 2002
  • “...E. coli K1 (16). MU33 contains the 3 end of the HI1508 Rd homolog (10), encoding a Mu-like protein, and the 5 end of an open TABLE 2. Sequence analysis and GC...”
  • “...ABC transport protein Carotovoricin Er tail protein Rd HI1508, Mu-like prophage protein GP36 Thermotoga maritima hypothetical protein 38.0 37.5 33.9 43.8 38.2...”
• Mu-like Prophage in serogroup B Neisseria meningitidis coding for surface-exposed antigens
  Masignani, Infection and immunity 2001
  • “...NMA1316 Not annotated gp35 gp36 HI1506 HI1508 NMA1845 NMA1844 197 gp37 HI1509 NMA1843 1118336-1118530 1118536-1119942 1120010-1120384 1120391-1120753...”
• Molecular and biological analysis of eight genetic islands that distinguish Neisseria meningitidis from the closely related pathogen Neisseria gonorrhoeae
  Klee, Infection and immunity 2000
  • “...morphogenesis) MuG homolog HI1568 MuI homolog HI1504 HI1505 HI1508 HI1509 Sheath protein gpL gpL (MuL) homolog HI1511 ORF15 64-kDa virion protein muN MuN...”
• Functional annotation of conserved hypothetical proteins from Haemophilus influenzae Rd KW20
  Shahbaaz, PloS one 2013
  • “...protein 244. HP HI1505 950373 P44227 Mu-like prophageFluMu major head subunit 245. HP HI1508 950376 P44230 Mu-like prophage protein GP36 246. HP HI1509 950377 P44231 Mu-like prophageFluMu protein gp37 247. HP HI1510 950834 P44232 Mu-like prophageFluMu protein gp38 248. HP HI1512 950378 P44234 Mu-like prophageFluMu tail...”
• Molecular and biological analysis of eight genetic islands that distinguish Neisseria meningitidis from the closely related pathogen Neisseria gonorrhoeae
  Klee, Infection and immunity 2000
  • “...E64126 X97918 P44225 P44226 Q01261 P45255 I64126 P44227 P44230 P44231 AB000833 P44233 AB009866 P08557 A64127 P08558 P31340 P44238 P44239 P44240 P54339 P44240...”

plu3435 No description from Photorhabdus luminescens subsp. laumondii TTO1
Aligns to 6:134 / 149 (86.6%), covers 99.2% of PF07030, 126.4 bits

• Cloning and sequencing of a genomic island found in the Brazilian purpuric fever clone of Haemophilus influenzae biogroup aegyptius
  McGillivary, Infection and immunity 2005
  • “...hypothetical protein Erp22, B. burgdorferi OM protein Plu3435, hypothetical protein CV2130, hypothetical protein ORF 1, E. carotovora tail sheath protein ORF...”
  • “...encoded products from the P. luminescens TT01 ORF Plu3435 and the C. violaceum CV2130 locus, respectively, both of which have no described function. Analysis...”

GPJ_BPMU / Q9T1V9 Gene product J; gpJ; Gene product 36; gp36 from Escherichia phage Mu (Bacteriophage Mu) (see 2 papers)
Aligns to 3:126 / 141 (87.9%), covers 96.0% of PF07030, 124.5 bits

• disruption phenotype: Accumulation of unattached tails and full heads.

NMB1101 hypothetical protein from Neisseria meningitidis MC58
Q9JZD7 DUF1320 domain-containing protein from Neisseria meningitidis serogroup B (strain MC58)
Aligns to 3:129 / 140 (90.7%), covers 97.6% of PF07030, 122.7 bits

• Comparative genome biology of a serogroup B carriage and disease strain supports a polygenic nature of meningococcal virulence
  Joseph, Journal of bacteriology 2010
  • “...a substantial part of the Mu-like prophage MuMenB (NMB1101 to NMB1105) Downloaded from http://jb.asm.org/ on February 12, 2017 by University of California,...”
• Mu-like Prophage in serogroup B Neisseria meningitidis coding for surface-exposed antigens
  Masignani, Infection and immunity 2001
  • “...431 gp29 gp30 NMB1097 NMB1098 NMB1099 NMB1100 NMB1101 1114006-114417 1114653-1115711 1116767-1115805 () 1116795-1117274 1117277-1117696 137 353 321 160 140...”
• Towards New Drug Targets? Function Prediction of Putative Proteins of Neisseria meningitidis MC58 and Their Virulence Characterization
  Shahbaaz, Omics : a journal of integrative biology 2015
  • “...31. 32. Q7DDP4 Q9JZL2 Q9JZE3 Q9JZE2 Q9JZD8 Q9JZD6 Q9JYB9 Q9JZE1 Q9JZD7 Q9JZC7 Q9JZC6 33. 34. Q9JYK2 Q9JYD6 35. Q9K0X0 36. P67259 37. 38. 39. 40. 41. 42. Q9K194...”

ECs4976 hypothetical protein from Escherichia coli O157:H7 str. Sakai
Aligns to 3:126 / 139 (89.2%), covers 99.2% of PF07030, 122.2 bits

• Whole-Transcriptome Analysis of Verocytotoxigenic Escherichia coli O157:H7 (Sakai) Suggests Plant-Species-Specific Metabolic Responses on Exposure to Spinach and Lettuce Extracts
  Crozier, Frontiers in microbiology 2016
  • “...these were differentially expressed in spinach leaf lysates or lettuce CWPSs: ECs1375, ECs2713, ECs4970 and ECs4976, ranging between threefold repressed and sevenfold induced. It is possible that some of these genes play a distinct role in plant colonization that has not yet been investigated. Table 1...”
  • “...-19.12 NS 10.08 ECs4970 x x Galactidol-1-phosphatol dehydrogenase, Citrobacter rodentium (94) NS NS NS 4.87 ECs4976 x x Galactidol-1-phosphatol dehydrogenase, Citrobacter rodentium (92) NS NS NS 7.13 ECs5165 Biofilm stress and motility protein A, Shigella flexneri Shi06HN006 (99) -6.01 60.15 NS -7.03 Homologs in E. coli...”

NMA1844 hypothetical protein from Neisseria meningitidis Z2491
Aligns to 3:128 / 141 (89.4%), covers 95.2% of PF07030, 119.9 bits

• Mu-like Prophage in serogroup B Neisseria meningitidis coding for surface-exposed antigens
  Masignani, Infection and immunity 2001
  • “...annotated gp35 gp36 HI1506 HI1508 NMA1845 NMA1844 197 gp37 HI1509 NMA1843 1118336-1118530 1118536-1119942 1120010-1120384 1120391-1120753 1121610-1121011 ()...”

DVU2713 conserved hypothetical protein from Desulfovibrio vulgaris Hildenborough
Aligns to 6:127 / 143 (85.3%), covers 87.1% of PF07030, 119.6 bits

• Expression profiling of hypothetical genes in Desulfovibrio vulgaris leads to improved functional annotation
  Elias, Nucleic acids research 2009
  • “...(filled diamond; prophage protein), DVU2711 (filled square; major head subunit), DVU2712 (filled triangle; hypothetical protein), DVU2713 (open square; prophage protein), DVU2714 (open circle; prophage protein), DVU2715 (open diamond; conserved hypothetical) and DVU2716 (open triangle; tail sheath protein). ( B ) Up-regulation of a four-gene operon of...”

HD1562 hypothetical protein from Haemophilus ducreyi 35000HP
Aligns to 2:156 / 169 (91.7%), covers 95.2% of PF07030, 97.9 bits

• Complete genomic sequence of bacteriophage B3, a Mu-like phage of Pseudomonas aeruginosa
  Braid, Journal of bacteriology 2004
  • “...protein BcepMu34, AAS47873 -- DucMu3 hypothetical protein HD1562, AAP96346 Mu gp36, VG36_BPMU DucMu3 hypothetical protein HD1563, AAP96347 DucMu3 hypothetical...”

ACG06_03965 DUF1320 domain-containing protein from Pseudomonas aeruginosa
Aligns to 3:156 / 171 (90.1%), covers 88.7% of PF07030, 89.9 bits

• Comparative genome and transcriptome analysis reveals distinctive surface characteristics and unique physiological potentials of Pseudomonas aeruginosa ATCC 27853
  Cao, BMC genomics 2017
  • “...ACG06_15075 ACG06_15120 ACG06_15175 ACG06_15230 Predicted membrane protein COG4373 ACG06_03925 Mu-like prophage FluMu protein gp28 COG4387 ACG06_03965 Mu-like prophage protein gp36 COG4570 ACG06_12235 Holliday junction resolvase COG4938 ACG06_22795 Uncharacterized conserved protein COG5005 ACG06_03940 Mu-like prophage protein gpG COG5268 ACG06_18730 Type IV secretory pathway, TrbD component COG5283 ACG06_23880...”

Dde_3378 Conserved hypothetical protein from Desulfovibrio desulfuricans G20
Aligns to 2:130 / 143 (90.2%), covers 97.6% of PF07030, 71.0 bits

• Transcriptomics and Functional Analysis of Copper Stress Response in the Sulfate-Reducing Bacterium Desulfovibrio alaskensis G20
  Tripathi, International journal of molecular sciences 2022
  • “...protein 1.87 0.60 Dde_1264 ** PAS modulated sigma54 specific transcriptional regulator, Fis family 1.82 0.67 Dde_3378 ** Uncharacterized protein 1.80 0.61 Dde_0930 ** Uncharacterized protein 1.70 0.53 Dde_3061 ** M18 family aminopeptidase 1.68 0.69 Dde_0925 ** Uncharacterized protein 1.67 0.62 Dde_0715 ## Uncharacterized protein 5.93 0.32...”

CJE0247 hypothetical protein from Campylobacter jejuni RM1221
Aligns to 2:117 / 132 (87.9%), covers 86.3% of PF07030, 35.1 bits

• A DNase encoded by integrated element CJIE1 inhibits natural transformation of Campylobacter jejuni
  Gaasbeek, Journal of bacteriology 2009
  • “...Hypothetical protein CJE0246 Conserved hypothetical protein CJE0247 Conserved domain protein CJE0248 Hypothetical protein CJE0249 Phage uncharacterized protein,...”
• Molecular signatures (unique proteins and conserved indels) that are specific for the epsilon proteobacteria (Campylobacterales)
  Gupta, BMC genomics 2006
  • “...[ YP_178268 ] CJE0946 [ YP_178948 ] CJE1470 [ YP_179456 ] CJE0206 [ YP_178229 ] CJE0247 [ YP_178270 ] CJE1046 [ YP_179042 ] CJE1629 [ YP_179610 ] CJE0208 [ YP_178231 ] CJE0248 [ YP_178271 ] CJE1048 [ YP_179043 ] CJE1829 [ YP_179799 ] CJE0211 [ YP_178234...”

Q7260_00310 phage protein Gp36 family protein from Campylobacter jejuni
Aligns to 22:138 / 152 (77.0%), covers 86.3% of PF07030, 34.7 bits

• Whole Genome Sequences, De Novo Assembly, and Annotation of Antibiotic Resistant Campylobacter jejuni Strains S27, S33, and S36 Newly Isolated from Chicken Meat
  He, Microorganisms 2024
  • “...Phage terminase large subunit Q7260_00305 65116 64517 WLF67123 199 DUF1804 family protein (Mu phage gp31) Q7260_00310 65567 65109 WLF67124 152 DUF1320 family protein (Mu phage gp36) Q7260_00315 66660 65683 WLF67125 325 Major capsid protein E, phage head Q7260_00325 68008 67193 WLF67127 271 Phage protease (Mu phage...”

Or search for genetic data about PF07030 in the Fitness Browser