Family Search for PF07043 (DUF1328)
April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.
PF07043 hits 26 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
PSYRMG_17725 DUF1328 domain-containing protein from Pseudomonas syringae UMAF0158
Aligns to 6:44 / 54 (72.2%), covers 100.0% of PF07043, 63.6 bits
PFL_0093 conserved hypothetical protein from Pseudomonas fluorescens Pf-5
Aligns to 6:44 / 54 (72.2%), covers 97.4% of PF07043, 61.5 bits
PA5482 hypothetical protein from Pseudomonas aeruginosa PAO1
PA14_72370 hypothetical protein from Pseudomonas aeruginosa UCBPP-PA14
Aligns to 6:44 / 53 (73.6%), covers 100.0% of PF07043, 61.0 bits
- A gene network-driven approach to infer novel pathogenicity-associated genes: application to Pseudomonas aeruginosa PAO1
De, mSystems 2023 - “...within pathway implicated in biofilm formation and long-term infection ( 106 ), and PA4738 and PA5482, which are involved in protection against osmotic stress ( 107 ). As pathogens encounter various stress factors during infection including osmotic stress that can interfere with cell envelope homeostasis (...”
- A VirB4 ATPase of the mobile accessory genome orchestrates core genome-encoded features of physiology, metabolism, and virulence of Pseudomonas aeruginosa TBCF10839
Wiehlmann, Frontiers in cellular and infection microbiology 2023 - “...Hypothetical protein 11.0 PA5401 Hypothetical protein 6.7 PA5446 Hypothetical protein 10.3 PA5460 Hypothetical protein 8.9 PA5482 Hypothetical protein 16.4 *Strains were grown side by side in ABC medium with 40 mM of citrate as a single carbon source up to the late exponential phase (optical density...”
- A non-classical LysR-type transcriptional regulator PA2206 is required for an effective oxidative stress response in Pseudomonas aeruginosa
Reen, PloS one 2013 - “...0.44 PA4739 conserved hypothetical protein 0.48 PA5085 probable transcriptional regulator 0.31 PA5481 hypothetical protein 0.39 PA5482 hypothetical protein 0.37 Genes that exhibited a 2-fold or greater alteration in expression in the PA2206 C strain compared to the PA2206 mutant strain (p<0.05) are listed. Positive values indicate...”
- Quorum quenching quandary: resistance to antivirulence compounds
Maeda, The ISME journal 2012 - “...PA14_24860 PA14_13390 PA14_10380 PA14_58350 PA4677 PA4738 PA4739 PA5482 PA14_61870 PA14_62680 PA14_62690 PA14_72370 mexB oprM by previous studies lasR rhlR coxB...”
- BqsR/BqsS constitute a two-component system that senses extracellular Fe(II) in Pseudomonas aeruginosa
Kreamer, Journal of bacteriology 2012 - “...formation protein iscA PA14_14750 PA14_72370 PA14_30410 PA3812 PA5482 PA2604 2.7 2.3 1.8 2.75E3 1.59E3 2.62E3 Probable iron-binding protein IscA Hypothetical...”
- Quorum-sensing regulation of a copper toxicity system in Pseudomonas aeruginosa
Thaden, Journal of bacteriology 2010 - “...2.3 1.0 1.2 1.5 2.2 2.1 opdD pilA betB PA5481 PA5482 1.5 1.0 1.1 1.1 1.1 2.0 2.4 2.1 2.0 2.2 exsE pcoB pcoA Protein description Secreted protein Transcriptional...”
- Effects of antibiotics on quorum sensing in Pseudomonas aeruginosa
Skindersoe, Antimicrobial agents and chemotherapy 2008 - “...Relative expression Reg.d Regulation by AZMc pprBb PA5481 PA5482 Gene Gene in P. aeruginosa TABLE 3--Continued ANTIMICROB. AGENTS CHEMOTHER. while CPR and CFT...”
- Early activation of quorum sensing in Pseudomonas aeruginosa reveals the architecture of a complex regulon
Schuster, BMC genomics 2007 - “...advanced by 3OC12-HSL-LasR but not C4-HSL-RhlR (Fig. 3D ). However, there were exceptions. PA5481 and PA5482, for example, can be advanced by 3OC12-HSL-LasR but not C4-HSL-RhlR (Fig. 3D ) although in a signal synthesis mutant they responded better to both signals than to 3OC12-HSL alone [...”
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- Biofilm formation of Pseudomonas aeruginosa in spaceflight is minimized on lubricant impregnated surfaces
Flores, NPJ microgravity 2023 - “...five DEG at day three correspond to: PA14_40310 (2.6-fold), malQ (3.1-fold) [PA2163], PA14_36650 (3.7-fold) [PA2159], PA14_72370 (5.1-fold) [PA5482] and pchF (3.2-fold). Again, the most differentially (under)expressed gene (PA14_72370) codes for a hypothetical protein. There was no systemic increased expression of extracellular matrix polysaccharides on day three...”
- Quorum quenching quandary: resistance to antivirulence compounds
Maeda, The ISME journal 2012 - “...PA14_58350 PA4677 PA4738 PA4739 PA5482 PA14_61870 PA14_62680 PA14_62690 PA14_72370 mexB oprM by previous studies lasR rhlR coxB coxA coIII napA napD napF aprE...”
- BqsR/BqsS constitute a two-component system that senses extracellular Fe(II) in Pseudomonas aeruginosa
Kreamer, Journal of bacteriology 2012 - “...3.58E3 Disulfide bond formation protein iscA PA14_14750 PA14_72370 PA14_30410 PA3812 PA5482 PA2604 2.7 2.3 1.8 2.75E3 1.59E3 2.62E3 Probable iron-binding...”
RC1_1636 hypothetical protein from Rhodospirillum centenum SW
Aligns to 6:44 / 54 (72.2%), covers 100.0% of PF07043, 59.8 bits
PP0135 conserved hypothetical protein from Pseudomonas putida KT2440
Aligns to 6:44 / 53 (73.6%), covers 97.4% of PF07043, 59.5 bits
SMc00796 HYPOTHETICAL TRANSMEMBRANE PROTEIN from Sinorhizobium meliloti 1021
Aligns to 6:41 / 54 (66.7%), covers 89.7% of PF07043, 58.3 bits
XAC0239 conserved hypothetical protein from Xanthomonas axonopodis pv. citri str. 306
Aligns to 6:44 / 52 (75.0%), covers 100.0% of PF07043, 58.0 bits
- RNA-seq and microarray complement each other in transcriptome profiling
Kogenaru, BMC genomics 2012 - “...were predicted to be T3SS secreted while 7 hypothetical proteins, XAC3275, XAC3680, XAC1943, XAC0527, XAC0599, XAC0239, and XAC0755 were predicted to be Type 2 Secretion System (T2SS) substrates (Additional file 1 : Table S6) by Effective database [ 60 ]. Gram-negative bacteria employ T2SS to transport...”
bsl5717 bsl5717 from Bradyrhizobium japonicum USDA 110
Aligns to 8:46 / 57 (68.4%), covers 100.0% of PF07043, 57.2 bits
BAB1_1670 hypothetical protein from Brucella melitensis biovar Abortus 2308
Aligns to 21:59 / 69 (56.5%), covers 100.0% of PF07043, 56.4 bits
- Transposon Sequencing of Brucella abortus Uncovers Essential Genes for Growth In Vitro and Inside Macrophages
Sternon, Infection and immunity 2018 - “...BAB2_0442 BAB2_0511 BAB2_0668 BAB1_0471 BAB2_1027 Unknown functions BAB1_0084 BAB1_1670 BAB1_1092 Gene name 2 h p.i. 5 h p.i. 24 h p.i. Predicted function copA...”
- The Brucella abortus virulence regulator, LovhK, is a sensor kinase in the general stress response signalling pathway
Kim, Molecular microbiology 2014 - “...2006 ), rpoH1 (bab1_1775) ( Delory et al ., 2006 ), dps (bab1_2150) , and bab1_1670 . Only the rpoH1 ( 32 -family gene) null mutant was defective in oxidative stress survival; its survival phenotype is equivalent to lovhK ( Figure 3C ). Mutants lacking ba14K...”
- “...24 hours, ba14K and rpoH1 replicate at a rate equivalent to wild-type. Neither dps nor bab1_1670 exhibit defects in intracellular replication ( Figure 3D ). We further assessed one of these mutants, ba14K , in an animal infection model. Deletion of the conserved hypothetical gene ba14K...”
RS02225 PROBABLE TRANSMEMBRANE PROTEIN from Ralstonia solanacearum GMI1000
Aligns to 23:61 / 72 (54.2%), covers 100.0% of PF07043, 56.1 bits
BMEI0373 Hypothetical Protein from Brucella melitensis 16M
Aligns to 2:40 / 50 (78.0%), covers 100.0% of PF07043, 53.4 bits
STM14_5481 DUF1328 family protein from Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
Aligns to 6:44 / 53 (73.6%), covers 100.0% of PF07043, 51.5 bits
- Proteome remodelling by the stress sigma factor RpoS/σS in Salmonella: identification of small proteins and evidence for post-transcriptional regulation
Lago, Scientific reports 2017 - “...in other bacterial genomes, prompted us to re-annotate the start codon of STM14_2239, STM14_2409, and STM14_5481 (Table 1 , Supplementary Fig. S5 , Supplementary Dataset S1 ). The uncharacterized ORFs ymdF and STM14_1829 are paralogous to yciG (Table 1 , Supplementary Fig. S6 ). YciG 33...”
- “...IPR009885 78 yjjZ 13, 14 Enterobacteriaceae STM14_5479 Not translated under the conditions used 44 Salmonella STM14_5481 Start codon re-annotated, 98% identity with E . coli YtjA, 2TM fragments, DUF1328 IPR009760 53 ytjA 13, 14 Bacteria and Archaea Paralogous genes e STM14_1275 KGG repeat IPR019626 55 Yes...”
- Repressor activity of the RpoS/σS-dependent RNA polymerase requires DNA binding
Lévi-Meyrueis, Nucleic acids research 2015 - “...protein ecnB 3219 114 12 Entericidin B membrane lipoprotein osmY 2396 333 17 Hypothetical protein STM14_5481 419 46 3 Hypothetical protein oat 6006 288 35 Putrescine-2-oxoglutarate aminotransferase ynfM 190 13 220 Putative transport protein a see also Supplementary data set S1. b STM14_1559 or 5non-coding region...”
RL4195 putative transmembrane protein from Rhizobium leguminosarum bv. viciae 3841
Aligns to 19:57 / 70 (55.7%), covers 100.0% of PF07043, 51.0 bits
STM4562 putative inner membrane protein from Salmonella typhimurium LT2
Aligns to 12:50 / 59 (66.1%), covers 100.0% of PF07043, 51.0 bits
- Contribution of the Cpx envelope stress system to metabolism and virulence regulation in Salmonella enterica serovar Typhimurium
Subramaniam, PloS one 2019 - “..., glpT , pfkB , pgtE , ssrB , STM1269 , STM2613 , STM3681 , STM4562 , tatA , ybiJ , yciG ) ( Fig 2C ). These potential novel CpxR target genes were clustered into genes with uncharacterized products ( STM1269 , STM2613 , STM3681...”
- Genetic and metabolic signatures of Salmonella enterica subsp. enterica associated with animal sources at the pangenomic scale
Vila, BMC genomics 2019 - “...) and are only constituted of core variants including an InDel in the intergenic region STM4562- yjjU and SNPs, as well as genes pepE , iroN , priA , ybeK and ilvY (Table 4 ). The dipeptidase E of S. Typhimurium (i.e. missense SNP in pepE...”
- Down-regulation of key virulence factors makes the Salmonella enterica serovar Typhimurium rfaH mutant a promising live-attenuated vaccine candidate
Nagy, Infection and immunity 2006 - “...(STM4561) and the possibly cotranscribed adjacent gene (STM4562), which encode a hyperosmotically inducible periplasmic protein and a putative inner membrane...”
Y11_38011 DUF1328 domain-containing protein from Yersinia enterocolitica subsp. palearctica Y11
Aligns to 6:44 / 53 (73.6%), covers 100.0% of PF07043, 50.7 bits
YtjA / b4568 DUF1328 domain-containing protein YtjA from Escherichia coli K-12 substr. MG1655 (see paper)
AAF13_RS19105 DUF1328 family protein from Escherichia coli O104:H4 str. C227-11
Aligns to 6:44 / 53 (73.6%), covers 100.0% of PF07043, 50.5 bits
SGRAN_2492 DUF1328 domain-containing protein from Sphingopyxis granuli
Aligns to 6:48 / 57 (75.4%), covers 97.4% of PF07043, 50.1 bits
UTI89_C5146 hypothetical protein from Escherichia coli UTI89
Aligns to 16:54 / 63 (61.9%), covers 100.0% of PF07043, 49.8 bits
- DFI-seq identification of environment-specific gene expression in uropathogenic Escherichia coli
Madelung, BMC microbiology 2017 - “...UTI89_C5139 hypothetical protein 1 1,551006847 UTI89_C5078 hypothetical protein 1 1,539466639 osmY periplasmic protein 1 1,536342614 UTI89_C5146 hypothetical protein (membrane protein) 1 1,529533673 yjjU; yjjV hypothetical protein (phospholipase); deoxyribonuclease YjjV (metal-dependent hydrolase) 2 1,525815587 dnaC DNA replication protein DnaC 1 1,525438036 UTI89_C3195 hypothetical protein 1 1,510078684 yjjM...”
- “...these proteins were by BLAST found to be putative membrane proteins (Table 5 ). UTI89_C5136, UTI89_C5146 and UTI89_C5068 have four, two and four transmembrane helices respectively. The remaining gene UTI89_C5140 encodes a protein which contains a single transmembrane helix located near the N-terminal. UTI89_C5140 is located...”
KPN_04833 putative amino acid/amine transport protein from Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Aligns to 27:65 / 74 (52.7%), covers 100.0% of PF07043, 49.3 bits
- Liquid Extraction Surface Analysis Mass Spectrometry of ESKAPE Pathogens
Havlikova, Journal of the American Society for Mass Spectrometry 2021 - “...from K. pneumoniae , and UPF0391 membrane protein SAMEA2054040_04753 was assigned to UPF0391 membrane protein KPN_04833, again from K. pneumoniae . The DUF1471 domain-containing protein was identified above by use of a biomarker search within the ProSightPC software, and the misassignment appears to be the result...”
CC_0673 hypothetical protein from Caulobacter crescentus CB15
CCNA_00709 hypothetical protein from Caulobacter crescentus NA1000
Aligns to 6:44 / 60 (65.0%), covers 97.4% of PF07043, 47.8 bits
YPO0432 putative exported protein from Yersinia pestis CO92
Aligns to 6:44 / 53 (73.6%), covers 100.0% of PF07043, 47.3 bits
NE1120 putative orf; Unknown function from Nitrosomonas europaea ATCC 19718
Aligns to 6:44 / 55 (70.9%), covers 100.0% of PF07043, 43.1 bits
ACICU_03627 hypothetical protein from Acinetobacter baumannii ACICU
Aligns to 6:44 / 52 (75.0%), covers 100.0% of PF07043, 42.2 bits
G8E09_00265 DUF1328 domain-containing protein from Acinetobacter pittii
Aligns to 6:44 / 52 (75.0%), covers 100.0% of PF07043, 42.0 bits
- Phenotypic Variation and Carbapenem Resistance Potential in OXA-499-Producing Acinetobacter pittii
Zhang, Frontiers in microbiology 2020 - “...2.12 0.0000 0.0018 G8E09_11775 Enoyl-CoA hydratase 2.10 0.0006 0.0196 G8E09_08705 Catechol 1,2-dioxygenase 2.10 0.0000 0.0008 G8E09_00265 DUF1328 domain-containing protein 2.08 0.0004 0.0151 G8E09_09085 NAD(P)H-binding protein 2.06 0.0000 0.0000 G8E09_08640 Hypothetical protein 2.02 0.0019 0.0437 G8E09_10100 Thiamine pyrophosphate-dependent dehydrogenaseE1 component subunit alpha 2.02 0.0001 0.0064 G8E09_10095 Alpha-ketoacid...”
ACIAD3602 conserved hypothetical protein ; putative menbrane protein from Acinetobacter sp. ADP1
Aligns to 6:44 / 52 (75.0%), covers 100.0% of PF07043, 41.6 bits
VP0082 putative transmembrane protein from Vibrio parahaemolyticus RIMD 2210633
Aligns to 6:51 / 58 (79.3%), covers 97.4% of PF07043, 39.6 bits
Or search for genetic data about PF07043 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory