PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF07119 (DUF1375)

PF07119.12 hits 10 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

PA3399 hypothetical protein (NCBI) from Pseudomonas aeruginosa PAO1
Aligns to 48:100 / 113 (46.9%), covers 98.1% of PF07119, 56.2 bits

YPO4086 putative lipoprotein (NCBI ptt file) from Yersinia pestis CO92
Aligns to 31:76 / 112 (41.1%), covers 96.2% of PF07119, 50.2 bits

Pfl01_2488 hypothetical protein (RefSeq) from Pseudomonas fluorescens Pf0-1
Aligns to 44:94 / 128 (39.8%), covers 94.3% of PF07119, 36.9 bits

PFLU0474 hypothetical protein (RefSeq) from Pseudomonas fluorescens SBW25
Aligns to 54:112 / 125 (47.2%), covers 100.0% of PF07119, 34.1 bits

c4608 hypothetical protein (RefSeq) from Escherichia coli CFT073
Aligns to 33:77 / 110 (40.9%), covers 94.3% of PF07119, 33.1 bits

YceK / b1050 DUF1375 domain-containing lipoprotein YceK from Escherichia coli K-12 substr. MG1655 (see 5 papers)
b1050 predicted lipoprotein (NCBI) from Escherichia coli str. K-12 substr. MG1655
Aligns to 31:69 / 75 (52.0%), covers 47.2% of PF07119, 32.7 bits

EcfI / b3688 DUF1375 domain-containing putative lipoprotein YidQ from Escherichia coli K-12 substr. MG1655 (see 2 papers)
b3688 orf, hypothetical protein (VIMSS) from Escherichia coli str. K-12 substr. MG1655
Aligns to 33:77 / 110 (40.9%), covers 94.3% of PF07119, 32.5 bits

t1768 putative lipoprotein (NCBI ptt file) from Salmonella enterica subsp. enterica serovar Typhi Ty2
Aligns to 43:69 / 75 (36.0%), covers 39.6% of PF07119, 31.9 bits

LIC12649 hypothetical protein (NCBI) from Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130
Aligns to 34:84 / 514 (9.9%), covers 92.5% of PF07119, 29.8 bits

YPTB2492 hypothetical protein (NCBI) from Yersinia pseudotuberculosis IP 32953
Aligns to 81:104 / 110 (21.8%), covers 37.7% of PF07119, 27.7 bits

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory