Family Search for PF07120 (DUF1376)

April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.

PF07120 hits 7 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

XF1664 hypothetical protein from Xylella fastidiosa 9a5c
Aligns to 8:92 / 108 (78.7%), covers 98.9% of PF07120, 121.3 bits

• DNA microarray-based genome comparison of a pathogenic and a nonpathogenic strain of Xylella fastidiosa delineates genes important for bacterial virulence
  Koide, Journal of bacteriology 2004
  • “...XF1250, XF1306, XF1581, XF1588, XF1589, XF1646, XF1663, XF1664, XF1686, XF1708, XF1709, XF1860, XF1863, XF1874, XF1877, XF1878, XF1884, XF1968, XF2193, XF2195,...”
  • “...protein XF1609 .................Glucose/galactose transporter XF1664 .................Hypothetical protein XF1746 .................Alcohol dehydrogenase XF1756...”

YdaU / b1359 Rac prophage; DUF1376 domain-containing protein YdaU from Escherichia coli K-12 substr. MG1655 (see 2 papers)
P76065 Uncharacterized protein YdaU from Escherichia coli (strain K12)
b1359 Rac prophage; conserved protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 22:105 / 285 (29.5%), covers 98.9% of PF07120, 92.6 bits

• EFG1 Mutations, Phenotypic Switching, and Colonization by Clinical a/α Strains of Candida albicans
  Park, mSphere 2020
  • “...BSI USA I EFG1 / EFG1 5 P48086 BSI USA I EFG1 / EFG1 6 P76065 BSI USA I EFG1 / EFG1 7 P22078 BSI UK SA EFG1 / EFG1 8 P75071 BSI Italy SA (4) EFG1 / EFG1 9 P80004 BSI USA SA (4) EFG1...”
  • “...sections. Switching by EFG1/EFG1 isolates. Of the 17 clinical isolates that were EFG1/EFG1 , four (P76065, P57096, 1298wh, and P37009) underwent switching from white to opaque on GlcNAc-agar under one or more sets of environmental conditions ( Fig.2B and TableS3 ). P76065 switched to opaque at...”
• Whole-genome sequencing analysis of two heat-evolved Escherichia coli strains
  McGuire, BMC genomics 2023
  • “...b1350 Rac prophage; exonuclease VIII, ds DNA exonuclease, 5 3 specific FS 496/866 ydaU * b1359 Rac prophage; DUF1376 domain-containing protein YdaU FS 178/285 ydcO b1433 putative transport protein YdcO FS 256/391 lsrF b1517 3-hydroxy-2,4-pentadione 5-phosphate thiolase FS 21/291 marB b1532 multiple antibiotic resistance protein T...”
• 18th Congress of the European Hematology Association, Stockholm, Sweden, June 13–16, 2013
  , Haematologica 2013
• Phenotypic screening of Escherichia coli K-12 Tn5 insertion libraries, using whole-genome oligonucleotide microarrays
  Winterberg, Applied and environmental microbiology 2005
  • “...microarray analysis of these Gene Global studya b1238 b1269 b1359 b1463 b1471 b1765 b1874 b1961 b2163 b3134 b3219 b3863 tdk yciL ydaU nhoA yddk ydjA cutC dcm...”
• Identification and mapping of self-assembling protein domains encoded by the Escherichia coli K-12 genome by use of lambda repressor fusions
  Mariño-Ramírez, Journal of bacteriology 2004
  • “...ytfL b0866 b0897 b0906 b1011 b1067 b1253 b1284 b1299 b1359 b1547 b1606 b1669 b1800 b1853 b1834 b1970 b2007 b2101 b2157 b2160 b2245 b2249 b2291 b2294 b2355 b2360...”

KZA74_10410 YdaU family protein from Acinetobacter baumannii
Aligns to 2:87 / 294 (29.3%), covers 98.9% of PF07120, 68.1 bits

• DNA damage response coregulator ddrR affects many cellular pathways and processes in Acinetobacter baumannii 17978
  Cook, Frontiers in cellular and infection microbiology 2023
  • “...umuDAb KZA74_10320 A1S_1587 downreg NSD ddrR and umuDAb KZA74_10405 A1S_1584 downreg NSD ddrR and umuDAb KZA74_10410 A1S_1583 downreg NSD ddrR and umuDAb KZA74_10415 NA downreg NSD ddrR and umuDAb KZA74_10420 A1S_3687 NSD NSD ddrR and umuDAb KZA74_10465 A1S_1580 downreg NSD ddrR and umuDAb KZA74_12350 A1S_1226 downreg...”

WP_054529722 DUF1376 domain-containing protein from Erythrobacter sp. SG61-1L
Aligns to 5:92 / 274 (32.1%), covers 96.6% of PF07120, 52.4 bits

• Isolation and characterization of the first phage infecting ecologically important marine bacteria Erythrobacter
  Lu, Virology journal 2017
  • “...ST904 WP_054436273 39 3.00E-23 29 - 12,867 13,688 822 273 hypothetical protein Erythrobacter sp. SG61-1L WP_054529722 40 3.00E-10 30 - 13,961 14,176 216 71 hypothetical protein None n/a n/a n/a 31 - 14,173 14,859 687 228 hypothetical protein Lactobacillus phage LL-H YP_001285924 43 1.00E-18 32 -...”

BH14490 hypothetical protein from Bartonella henselae str. Houston-1
Aligns to 1:72 / 309 (23.3%), covers 77.0% of PF07120, 41.0 bits

• Gene Transfer Agent Promotes Evolvability within the Fittest Subpopulation of a Bacterial Pathogen
  Québatte, Cell systems 2017
  • “...bp-long intergenic sequence as well as a 338-bp-long segment spanning the 5portion of the gene BH14490 (renamed brrC , for Bartonella ROR) ( Table S6 ). Previous estimates on the ROR location based on sequence conservation have also linked brrC with the site of ROR replication...”
  • “...single maximum for the insertion ratio was obtained for the intergenic region between BH14480 and BH14490 pinpointing to the ROR origin of the GTA system. Essentiality Analysis and Calculation of Donor Transfer Z-score and Recipient Uptake Z-score The metrics and statistical analysis for classification of protein...”

B2I23_RS05235 DUF1376 domain-containing protein from Candidatus Liberibacter asiaticus
Aligns to 1:60 / 155 (38.7%), covers 63.2% of PF07120, 40.3 bits

• The Genome of "Candidatus Liberibacter asiaticus" Is Highly Transcribed When Infecting the Gut of Diaphorina citri
  Darolt, Frontiers in microbiology 2021
  • “...Reads in the Las I library were the only ones to map against the gene B2I23_RS05235 that codes a YdaU family protein (unknown function with domain DUF1376), showing the specific expression of this gene at the initial stage of the acquisition process. Four other genes (B2I23_RS00005,...”

A1S_1584 hypothetical protein from Acinetobacter baumannii ATCC 17978
Aligns to 1:58 / 265 (21.9%), covers 66.7% of PF07120, 32.4 bits

• DNA damage response coregulator ddrR affects many cellular pathways and processes in Acinetobacter baumannii 17978
  Cook, Frontiers in cellular and infection microbiology 2023
  • “...KZA74_09100 A1S_3727 NSD NSD ddrR and umuDAb KZA74_10320 A1S_1587 downreg NSD ddrR and umuDAb KZA74_10405 A1S_1584 downreg NSD ddrR and umuDAb KZA74_10410 A1S_1583 downreg NSD ddrR and umuDAb KZA74_10415 NA downreg NSD ddrR and umuDAb KZA74_10420 A1S_3687 NSD NSD ddrR and umuDAb KZA74_10465 A1S_1580 downreg NSD...”

Or search for genetic data about PF07120 in the Fitness Browser