Family Search for PF07295 (DUF1451)
April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.
PF07295 hits 8 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
y1185 putative alpha helical protein from Yersinia pestis KIM
Aligns to 19:163 / 166 (87.3%), covers 99.3% of PF07295, 173.3 bits
STM0653 putative cytoplasmic protein from Salmonella typhimurium LT2
Aligns to 13:154 / 157 (90.4%), covers 99.3% of PF07295, 169.3 bits
SPWS13_3995 zinc ribbon-containing protein from Shewanella putrefaciens
Aligns to 21:163 / 166 (86.1%), covers 99.3% of PF07295, 168.9 bits
- Comparative Transcriptome Analysis of Shewanella putrefaciens WS13 Biofilms Under Cold Stress
Yan, Frontiers in cellular and infection microbiology 2022 - “...ID Name Log 2 FC Definition Biofilm formation - Pseudomonas aeruginosa AVV85673.1 -2.77 Hypothetical protein SPWS13_3995 AVV82533.1 -3.75 Crp/Fnr family transcriptional regulator AVV82532.1 -5.68 Crp/Fnr family transcriptional regulator AVV85155.1 nrfG -2.66 Nitrite reductase AVV83548.1 -1.96 GntR family transcriptional regulator AVV85962.1 flgM -1.01 Anti-sigma-28 factor FlgM AVV85989.1...”
SO_1175 conserved hypothetical protein from Shewanella oneidensis MR-1
Aligns to 3:145 / 148 (96.6%), covers 98.6% of PF07295, 168.7 bits
YbeL / b0643 DUF1451 domain-containing protein YbeL from Escherichia coli K-12 substr. MG1655 (see 4 papers)
NP_415176 DUF1451 domain-containing protein YbeL from Escherichia coli str. K-12 substr. MG1655
b0643 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
ECs0681 putative alpha helical protein from Escherichia coli O157:H7 str. Sakai
Aligns to 13:157 / 160 (90.6%), covers 99.3% of PF07295, 167.3 bits
- Sea Bass Immunization to Downsize the Betanodavirus Protein Displayed in the Surface of Inactivated Repair-Less Bacteria
Lama, Vaccines 2019 - “...24 ] YAIN + frgC 91220 NP_414891 26.3 [ 39 ] YBEL + frgC 91220 NP_415176 34.8 [ 39 ] vaccines-07-00094-t002_Table 2 Table 2 Comparison of E. coli culture media. Component Concentration, % TB SB Yeast extract 2.4 X X Glycerol 0.8 X X KHPO4 0.9...”
- Genome-Scale Mapping of Escherichia coli σ54 Reveals Widespread, Conserved Intragenic Binding
Bonocora, PLoS genetics 2015 - “...2197 10.286 IA07 674001 1 GC GG TATTGCTC TTGC A 673997 + b0642 leuS - b0643 ybeL 225 8.124 IA08 702665 8 C TGGC CTGCTTTA TGC A 702663 + b0678 nagB - b0679 nagE 485 10.647 IA09 797417 4 CCA GC ACGGTTT TTGC A 797422 +...”
- Global analysis of extracytoplasmic stress signaling in Escherichia coli
Bury-Moné, PLoS genetics 2009 - “...yhjV b3539 Inner membrane transport protein YhjV 2.7 ybaQ b0483 Predicted transcriptional regulator 2.6 ybeL b0643 Conserved protein 2.6 smpA O W b2617 Outer membrane lipoprotein, component of Outer Membrane Protein Assembly Complex 2.5 puuC (aldH) puuB (ordL), puuE (goaG) b1300-2 -glutamyl--aminobutyraldehyde dehydrogenase (putrescine utilization pathway)...”
- Analysis of promoter targets for Escherichia coli transcription elongation factor GreA in vivo and in vitro
Stepanova, Journal of bacteriology 2007 - “...conditions Alias Effect of wt GreA (fold) ybeLb b0643 3.2 Conserved protein; putative alpha helical protein gatD gatC gatB gatA gatZ gatY b2091 b2092...”
- Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivity
Weber, Journal of bacteriology 2005 - “...b2659 b2266 b1990 b3361 b1051 b4107 b0389 b0419 b0581 b0643 b0707 b0753 b0767 b0865 b1003 b1050 b1188 b1164 b1258 b1259 b1341 b1547 b1614 b1783 b1784 b1847...”
- Combined, functional genomic-biochemical approach to intermediary metabolism: interaction of acivicin, a glutamine amidotransferase inhibitor, with Escherichia coli K-12
Smulski, Journal of bacteriology 2001 - “...b0305 b0358 b0458 b0485 b0572 b0573 b0581 b0600 b0607 b0643 b0662 b0707 b0753 b0786 b0789 b0790 b0800 b0806 b0836 b0865 b0897 b0964 b0966 b1003 b1045 b1050...”
- Global transcriptional response of Escherichia coli O157:H7 to growth transitions in glucose minimal medium
Bergholz, BMC microbiology 2007 - “...ybdE -2.70 1 ECs2362 lhr -2.16 1 ECs0670 dacA -2.32 1 ECs2367 purR -2.51 1 ECs0681 ybeL 2.78 2 ECs2431 yniA 3.52 2 ECs0773 tolR -2.29 1 ECs2433 yniC 2.44 3 ECs0782 aroG -3.09 1 ECs2445 osmE 2.33 2 ECs0800 ybhC -2.13 1 ECs2510 yeaV 2.06...”
VC0957 conserved hypothetical protein from Vibrio cholerae O1 biovar eltor str. N16961
Aligns to 13:153 / 156 (90.4%), covers 99.3% of PF07295, 164.8 bits
- Magnetic chitin beads (MCB) coated with Vibrio cholerae reveals transcriptome dynamics in adult mice with a complex gut microbiota
Qin, Gut microbes 2023 - “...S4a, c). However, vca0571 overexpression resulted in a significant reduction in motility (Figure S4b), whereas vc0957 and vca0880 overexpression significantly increased H 2 O 2 sensitivity compared with the wild-type (Figure S4d). We also investigated whether there was a difference in the adhesion ability of different...”
- “...the gut microbiota and its metabolites. Transcriptome comparisons identified several candidate genes for further studies: vc0957 codes for a zinc ribbon-containing protein, the product of vc1080 contains a Hpt domain, vca0551 and vca0880 give hypothetical proteins, vca0571 produces a DUF3319 domain-containing protein, vca1086 gives a SpoIIE...”
- Experimental discovery of sRNAs in Vibrio cholerae by direct cloning, 5S/tRNA depletion and parallel sequencing
Liu, Nucleic acids research 2009 - “...VC1499 16111611611276 (+) 116 + + + ORF6 VC0689 736177736300 (+) 124 + + ORF7 VC0957 10215231021633 (+) 111 + + a For IGR-sRNA candidates, the gene numbers for the up- and downstream ORF are indicated. Genes encoded on the plus strand are denoted with >>...”
- “...ORF7) are transcribed within ORFs that are less that 500 bp long (VC2540, 393 bp; VC0957, 471 bp, respectively). These ORFs are annotated as encoding hypothetical proteins; however, in our northern blots we do not observe the full-length mRNA transcripts ( Supplementary Figure 2 ). It...”
AOG25_15960, BAU10_02660 zinc ribbon-containing protein from Vibrio alginolyticus
Aligns to 13:153 / 156 (90.4%), covers 98.0% of PF07295, 159.6 bits
- Holistic analysis of lysine acetylation in aquaculture pathogenic bacteria Vibrio alginolyticus under bile salt stress
Xiao, Frontiers in veterinary science 2023 - “...secA, secD, secY, tolC, tatA, yajC, yidC , and clpB ), chemotaxis and motility ( AOG25_15960, cheA, cheY, frr, AOG25_15815, HUO05_08750 , and N646_1361 ), adherence ( N646_1788 and VMC_30830 ), and toxin ( AOG25_14550 ). Acetylation modification of virulence factors may play an important role...”
- “...Secretion system A0A0H0YHX3 yidC K386 Secretion system A0A0H0Y8A6 clpB K325; K476; K738 Secretion system A0A0H0YF90 AOG25_15960 K20 Chemotaxis and motility A0A1W6TTD5 cheA K463; K658 Chemotaxis and motility Q2PED8 cheY K120 Chemotaxis and motility A0A0G9M2M6 frr K21 Chemotaxis and motility A0A0G9LVQ9 AOG25_15815 K57; K237 Chemotaxis and motility...”
- Identification of a Novel Small RNA srvg23535 in Vibrio alginolyticus ZJ-T and Its Characterization With Phenotype MicroArray Technology
Deng, Frontiers in microbiology 2018 - “...BAU10_03760 Hypothetical protein BAU10_19400 Hypothetical protein BAU10_18585 Hypothetical protein BAU10_07805 Hypothetical protein BAU10_19060 Hypothetical protein BAU10_02660 Hypothetical protein Construction of srvg23535 Null Mutant A gene disruptant of srvg23535 , from 46 bp before the 5 end to 2 bp after the 3 end, was constructed (...”
HMPREF0389_RS04690 rubredoxin-like protein from Filifactor alocis ATCC 35896
Aligns to 1:45 / 46 (97.8%), covers 27.2% of PF07295, 35.5 bits
Or search for genetic data about PF07295 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory