PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF07338 (DUF1471)

PF07338.13 hits 40 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YPO2305 putative exported protein (NCBI ptt file) from Yersinia pestis CO92
y2136 hypothetical protein (NCBI ptt file) from Yersinia pestis KIM
3 alignments in 35:317 / 317 (53.9%), covering up to 100.0% of PF07338, 215.4 bits

SSON_1556 hypothetical protein (NCBI) from Shigella sonnei Ss046
3 alignments in 34:314 / 314 (54.1%), covering up to 100.0% of PF07338, 202.7 bits

YdgH / b1604 DUF1471 domain-containing protein YdgH from Escherichia coli K-12 substr. MG1655
b1604 hypothetical protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
3 alignments in 34:314 / 314 (54.1%), covering up to 100.0% of PF07338, 202.7 bits

STM1478 putative periplasmic protein (NCBI ptt file) from Salmonella typhimurium LT2
3 alignments in 34:314 / 314 (54.1%), covering up to 100.0% of PF07338, 196.4 bits

STM3361 putative outer membrane protein (NCBI ptt file) from Salmonella typhimurium LT2
Aligns to 34:87 / 87 (62.1%), covers 98.2% of PF07338, 79.6 bits

YhcN / b3238 DUF1471 domain-containing stress-induced protein YhcN from Escherichia coli K-12 substr. MG1655 (see 5 papers)
b3238 orf, hypothetical protein (VIMSS) from Escherichia coli str. K-12 substr. MG1655
P64614 Uncharacterized protein YhcN from Escherichia coli (strain K12)
Aligns to 34:87 / 87 (62.1%), covers 98.2% of PF07338, 79.0 bits

y0666 hypothetical protein (NCBI ptt file) from Yersinia pestis KIM
Aligns to 34:87 / 87 (62.1%), covers 100.0% of PF07338, 76.9 bits

y3909 hypothetical protein (NCBI ptt file) from Yersinia pestis KIM
Aligns to 39:92 / 92 (58.7%), covers 100.0% of PF07338, 75.1 bits

KPK_4095 hypothetical protein (RefSeq) from Klebsiella pneumoniae 342
Aligns to 33:90 / 90 (64.4%), covers 100.0% of PF07338, 72.5 bits

STY1254 putative secreted protein (NCBI ptt file) from Salmonella enterica subsp. enterica serovar Typhi str. CT18
Aligns to 33:85 / 85 (62.4%), covers 98.2% of PF07338, 70.5 bits

SL1344_1151 DUF1471 domain-containing protein from Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Aligns to 33:85 / 85 (62.4%), covers 98.2% of PF07338, 70.5 bits

EAE_13230, YP_004592839 hypothetical protein from Klebsiella aerogenes KCTC 2190
Aligns to 33:90 / 90 (64.4%), covers 100.0% of PF07338, 70.3 bits

ComC / b1112 DUF1471 domain-containing multiple stress resistance outer membrane protein BhsA from Escherichia coli K-12 substr. MG1655 (see 9 papers)
BHSA_ECOLI / P0AB40 Multiple stress resistance protein BhsA; Copper-induced outer membrane component from Escherichia coli (strain K12) (see 2 papers)
bhsA multiple stress resistance protein bhsA from Escherichia coli K12 (see 4 papers)
NP_415630 biofilm, cell surface and signaling protein from Escherichia coli str. K-12 substr. MG1655
NP_309517 multiple stress resistance protein BhsA from Escherichia coli O157:H7 str. Sakai
b1112 hypothetical protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
Aligns to 33:85 / 85 (62.4%), covers 98.2% of PF07338, 69.7 bits

YjfY / b4199 DUF1471 domain-containing protein YjfY from Escherichia coli K-12 substr. MG1655 (see paper)
b4199 hypothetical protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
Z5808 orf, hypothetical protein (NCBI ptt file) from Escherichia coli O157:H7 EDL933
ECs5175 hypothetical protein (NCBI ptt file) from Escherichia coli O157:H7 str. Sakai
Aligns to 35:91 / 91 (62.6%), covers 98.2% of PF07338, 68.8 bits

SBG_0068 DUF1471 domain-containing protein from Salmonella bongori NCTC 12419
Aligns to 35:92 / 96 (60.4%), covers 100.0% of PF07338, 68.4 bits

y1667 hypothetical protein (NCBI ptt file) from Yersinia pestis KIM
Aligns to 34:86 / 86 (61.6%), covers 100.0% of PF07338, 68.2 bits

Ent638_3824 protein of unknown function DUF1471 (RefSeq) from Enterobacter sp. 638
Aligns to 36:89 / 89 (60.7%), covers 100.0% of PF07338, 67.0 bits

Pat9b_3745 DUF1471 domain-containing protein from Pantoea sp. At-9b
Aligns to 33:90 / 90 (64.4%), covers 100.0% of PF07338, 66.7 bits

STM0082 putative secreted protein (NCBI ptt file) from Salmonella typhimurium LT2
NP_459087 hypothetical protein from Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
SEN0084 probable secreted protein (RefSeq) from Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
Aligns to 35:92 / 96 (60.4%), covers 98.2% of PF07338, 66.4 bits

SC0077 putative secreted protein (NCBI) from Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
Aligns to 35:92 / 96 (60.4%), covers 98.2% of PF07338, 66.4 bits

YjfN / b4188 protease activator from Escherichia coli K-12 substr. MG1655 (see 5 papers)
b4188 orf, hypothetical protein (VIMSS) from Escherichia coli str. K-12 substr. MG1655
Aligns to 35:90 / 91 (61.5%), covers 98.2% of PF07338, 66.1 bits

ECs5164 hypothetical protein (NCBI) from Escherichia coli O157:H7 str. Sakai
Aligns to 39:94 / 95 (58.9%), covers 98.2% of PF07338, 65.9 bits

YbiM / b0806 DUF1471 domain-containing protein McbA from Escherichia coli K-12 substr. MG1655 (see 2 papers)
MCBA_ECOLI / P0AAX6 Uncharacterized protein McbA; MqsR-controlled colanic acid and biofilm protein A from Escherichia coli (strain K12) (see paper)
mcbA / ECOCYC|G6415-MONOMER MqsR-controlled colanic acid and biofilm protein A from Escherichia coli K12 (see paper)
b0806 orf, hypothetical protein (VIMSS) from Escherichia coli str. K-12 substr. MG1655
NP_415327 colanic acid mucoidy stimulation protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 34:86 / 86 (61.6%), covers 100.0% of PF07338, 65.0 bits

ROD_12311 hypothetical protein (RefSeq) from Citrobacter rodentium ICC168
Aligns to 51:108 / 112 (51.8%), covers 98.2% of PF07338, 65.0 bits

ECs0884 hypothetical protein (NCBI ptt file) from Escherichia coli O157:H7 str. Sakai
Z1027 orf, hypothetical protein (NCBI ptt file) from Escherichia coli O157:H7 EDL933
Aligns to 82:134 / 134 (39.6%), covers 100.0% of PF07338, 63.5 bits

STY0860 putative exported protein (NCBI ptt file) from Salmonella enterica subsp. enterica serovar Typhi str. CT18
Aligns to 34:86 / 86 (61.6%), covers 100.0% of PF07338, 62.3 bits

Z1023 orf, hypothetical protein (NCBI ptt file) from Escherichia coli O157:H7 EDL933
Aligns to 34:86 / 86 (61.6%), covers 100.0% of PF07338, 61.0 bits

YbiJ / b0802 DUF1471 domain-containing protein YbiJ from Escherichia coli K-12 substr. MG1655 (see 5 papers)
b0802 hypothetical protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
Aligns to 34:86 / 86 (61.6%), covers 100.0% of PF07338, 60.9 bits

y0640 hypothetical protein (RefSeq) from Yersinia pestis KIM
Aligns to 48:103 / 103 (54.4%), covers 100.0% of PF07338, 56.9 bits

STM0366 putative periplasmic protein (NCBI ptt file) from Salmonella typhimurium LT2
Aligns to 37:89 / 91 (58.2%), covers 100.0% of PF07338, 56.8 bits

YjfO / b4189 DUF1471 domain-containing putative lipoprotein BsmA from Escherichia coli K-12 substr. MG1655 (see 4 papers)
BSMA_ECOLI / P39297 Lipoprotein BsmA; Biofilm stress and motility protein from Escherichia coli (strain K12) (see paper)
NP_418610 bioflm peroxide resistance protein from Escherichia coli str. K-12 substr. MG1655
b4189 orf, hypothetical protein (VIMSS) from Escherichia coli str. K-12 substr. MG1655
Aligns to 53:108 / 109 (51.4%), covers 100.0% of PF07338, 54.3 bits

ECs5165 hypothetical protein (NCBI) from Escherichia coli O157:H7 str. Sakai
Aligns to 53:108 / 109 (51.4%), covers 100.0% of PF07338, 53.2 bits

STM0565 putative periplasmic protein (NCBI ptt file) from Salmonella typhimurium LT2
Aligns to 25:78 / 78 (69.2%), covers 100.0% of PF07338, 52.5 bits

SC0602 putative periplasmic protein (NCBI) from Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
Aligns to 25:78 / 78 (69.2%), covers 100.0% of PF07338, 52.5 bits

EDL933_0387 DUF1471 domain-containing protein from Escherichia coli O157:H7 str. EDL933
ECs0383 hypothetical protein (NCBI ptt file) from Escherichia coli O157:H7 str. Sakai
Aligns to 37:89 / 91 (58.2%), covers 100.0% of PF07338, 51.5 bits

ETAE_2188 hypothetical protein (RefSeq) from Edwardsiella tarda EIB202
Aligns to 33:89 / 89 (64.0%), covers 98.2% of PF07338, 50.6 bits

YahO / b0329 DUF1471 domain-containing protein YahO from Escherichia coli K-12 substr. MG1655 (see 3 papers)
b0329 hypothetical protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
P75694 Uncharacterized protein YahO from Escherichia coli (strain K12)
Aligns to 37:89 / 91 (58.2%), covers 100.0% of PF07338, 49.8 bits

LV106 hypothetical protein (RefSeq) from Klebsiella pneumoniae
Aligns to 34:86 / 86 (61.6%), covers 96.4% of PF07338, 49.6 bits

RclB / b0303 DUF1471 domain-containing protein RclB from Escherichia coli K-12 substr. MG1655 (see 2 papers)
RCLB_ECOLI / P75687 Uncharacterized protein RclB; Reactive chlorine resistance protein B from Escherichia coli (strain K12) (see paper)
b0303 orf, hypothetical protein (VIMSS) from Escherichia coli str. K-12 substr. MG1655
Aligns to 28:78 / 78 (65.4%), covers 91.1% of PF07338, 40.9 bits

KP1_4563 hypothetical protein (RefSeq) from Klebsiella pneumoniae NTUH-K2044
Aligns to 34:81 / 81 (59.3%), covers 85.7% of PF07338, 32.7 bits

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory