PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF07338 (YdgH_BhsA-like)

PaperBLAST, GapMind, SitesBLAST, and Sites on a Tree will be down for server maintenance on Friday March 29.

Running HMMer for PF07338

PF07338 hits 76 sequences in PaperBLAST's database above the trusted cutoff. Showing hits to curated sequences only. Or see all hits or try another family.

YdgH / b1604 DUF1471 domain-containing protein YdgH from Escherichia coli K-12 substr. MG1655
3 alignments in 34:314 / 314 (54.1%), covering up to 100.0% of PF07338, 204.5 bits

YhcN / b3238 DUF1471 domain-containing stress-induced protein YhcN from Escherichia coli K-12 substr. MG1655 (see 5 papers)
Aligns to 34:87 / 87 (62.1%), covers 98.2% of PF07338, 81.1 bits

ComC / b1112 DUF1471 domain-containing multiple stress resistance outer membrane protein BhsA from Escherichia coli K-12 substr. MG1655 (see 10 papers)
BHSA_ECOLI / P0AB40 Multiple stress resistance protein BhsA; Copper-induced outer membrane component from Escherichia coli (strain K12) (see 2 papers)
Aligns to 33:85 / 85 (62.4%), covers 98.2% of PF07338, 73.9 bits

YjfY / b4199 DUF1471 domain-containing protein YjfY from Escherichia coli K-12 substr. MG1655 (see paper)
Aligns to 35:91 / 91 (62.6%), covers 98.2% of PF07338, 70.5 bits

YbiM / b0806 DUF1471 domain-containing protein McbA from Escherichia coli K-12 substr. MG1655 (see 2 papers)
MCBA_ECOLI / P0AAX6 Uncharacterized protein McbA; MqsR-controlled colanic acid and biofilm protein A from Escherichia coli (strain K12) (see paper)
Aligns to 34:86 / 86 (61.6%), covers 100.0% of PF07338, 69.6 bits

YjfN / b4188 protease activator YjfN from Escherichia coli K-12 substr. MG1655 (see 5 papers)
Aligns to 35:91 / 91 (62.6%), covers 98.2% of PF07338, 68.9 bits

YbiJ / b0802 DUF1471 domain-containing protein YbiJ from Escherichia coli K-12 substr. MG1655 (see 5 papers)
Aligns to 34:86 / 86 (61.6%), covers 100.0% of PF07338, 63.9 bits

YjfO / b4189 DUF1471 domain-containing putative lipoprotein BsmA from Escherichia coli K-12 substr. MG1655 (see 4 papers)
BSMA_ECOLI / P39297 Lipoprotein BsmA; Biofilm stress and motility protein from Escherichia coli (strain K12) (see paper)
Aligns to 53:108 / 109 (51.4%), covers 100.0% of PF07338, 58.3 bits

YahO / b0329 DUF1471 domain-containing protein YahO from Escherichia coli K-12 substr. MG1655 (see 3 papers)
Aligns to 37:89 / 91 (58.2%), covers 100.0% of PF07338, 50.1 bits

RclB / b0303 DUF1471 domain-containing protein RclB from Escherichia coli K-12 substr. MG1655 (see 2 papers)
RCLB_ECOLI / P75687 Uncharacterized protein RclB; Reactive chlorine resistance protein B from Escherichia coli (strain K12) (see paper)
Aligns to 28:78 / 78 (65.4%), covers 90.9% of PF07338, 42.7 bits

Or search for genetic data about PF07338 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory