Family Search for PF07358 (DUF1482)

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PF07358 hits 7 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YebW / b1837 DUF1482 domain-containing protein YebW from Escherichia coli K-12 substr. MG1655 (see paper)
b1837 orf, hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 1:57 / 63 (90.5%), covers 100.0% of PF07358, 119.8 bits

• 18th Congress of the European Hematology Association, Stockholm, Sweden, June 13–16, 2013
  , Haematologica 2013

STM1852 putative inner membrane lipoprotein from Salmonella typhimurium LT2
Aligns to 1:57 / 63 (90.5%), covers 100.0% of PF07358, 114.2 bits

• A connecter-like factor, CacA, links RssB/RpoS and the CpxR/CpxA two-component system in Salmonella
  Kato, BMC microbiology 2012
  • “...a negative control (Figure 1A ). Sequence analysis revealed that pWN1 harbors only the intact STM1852 open reading frame (ORF), which appeared to encode a 63-amino acid protein with no homology to any protein of known function, as well as the 3 region of STM1851 and...”
  • “...increase in the -galactosidase activity observed in the cpxP lac strain, supporting the hypothesis that STM1852 was affecting cpxP transcription in the pWN1 plasmid. Here, we named STM1852 C px a ctivating c onnector-like factor A , or CacA. Figure 1 The identification of a novel...”
• In silico identification and experimental validation of PmrAB targets in Salmonella typhimurium by regulatory motif detection
  Marchal, Genome biology 2004
  • “...to putative cytoplasmic protein 0.759519 CTTATTATTCACATAAC / / 1000 Some or all Salmonella only? yebW STM1852 ; Ortholog of E. coli ORF, hypothetical protein (AAC74907.1); BLAST hit to putative inner membrane lipoprotein 0.754895 CTCAATGTTAACTACTT / / 1000 All nine genomes? STM0897 Hypothetical protein Fels-1 prophage 0.754468...”

YdfD / b1576 Qin prophage; lysis protein from Escherichia coli K-12 substr. MG1655 (see 3 papers)
b1576 Qin prophage; predicted protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 4:61 / 63 (92.1%), covers 100.0% of PF07358, 89.0 bits

• Novel genes associated with enhanced motility of Escherichia coli ST131
  Kakkanat, PloS one 2017
  • “...9.48 N5-glutamine methyltransferase R EC958_3401 yghB b3009 9.17 general envelope maintenance protein S EC958_4909 ydfD b1576 9.15 - EC958_1929 ydiV # b0688 8.88 anti-FlhD 4 C 2 factor T EC958_2115 yecG b1895 8.82 universal stress protein T EC958_1122 ihfB # b0912 8.78 integration host factor (IHF)...”
• 18th Congress of the European Hematology Association, Stockholm, Sweden, June 13–16, 2013
  , Haematologica 2013
• Characterization of Escherichia coli MG1655 grown in a low-shear modeled microgravity environment
  Tucker, BMC microbiology 2007
  • “...membrane present flxA b1566 2.14 0.0215 orf, hypothetical protein (member of FliA regulon) membrane ydfD b1576 3.75 0.0003 prophage & phage related function (Qin prophage) cheZ b1881 yes 2.02 0.0032 chemotactic response; CheY protein phophatase membrane present tar b1886 ? 2.02 0.0006 methyl-accepting chemotaxis protein II,...”
  • “...STM1174 <2 flgD b1075 1.96 flgD STM1176 <2 flgE b1076 2.40 flgE STM1177 <2 ydfD b1576 2.64 not present fliZ b1921 2.22 fliZ STM1955 <2 dctR b3507 2.58 not present hdeB b3509 6.25 slyA STM1444 <2 hdeA b3510 4.41 slyA STM1444 <2 hdeD b3511 3.51 not...”

EC958_4909 DUF1482 family protein from Escherichia coli O25b:H4-ST131
ECs1760 hypothetical protein from Escherichia coli O157:H7 str. Sakai
Aligns to 4:61 / 63 (92.1%), covers 100.0% of PF07358, 86.5 bits

• Novel genes associated with enhanced motility of Escherichia coli ST131
  Kakkanat, PloS one 2017
  • “...hemK b1212 9.48 N5-glutamine methyltransferase R EC958_3401 yghB b3009 9.17 general envelope maintenance protein S EC958_4909 ydfD b1576 9.15 - EC958_1929 ydiV # b0688 8.88 anti-FlhD 4 C 2 factor T EC958_2115 yecG b1895 8.82 universal stress protein T EC958_1122 ihfB # b0912 8.78 integration host...”
• Gene expression induced in Escherichia coli O157:H7 upon exposure to model apple juice
  Bergholz, Applied and environmental microbiology 2009
  • “...ECs1576 ECs1588 ECs1593 ECs1612 ECs1654 ECs1655 ECs1691 ECs1760 ECs1763 ECs1771 ECs1775 ECs1823 ECs1824 ECs1829 ECs1830 ECs1831 ECs1845 ECs2000 ECs2019 ECs2020...”

c1404 Hypothetical protein ydfD from Escherichia coli CFT073
Aligns to 7:64 / 66 (87.9%), covers 100.0% of PF07358, 86.1 bits

• Mouse Trmt2B protein is a dual specific mitochondrial metyltransferase responsible for m⁵U formation in both tRNA and rRNA
  Laptev, RNA biology 2020 (secret)
• The role of 16S RNA in ribosome function: single base alterations and their effect on in vitro protein synthesis
  Cunningham, Archivos de biologia y medicina experimentales 1988 (PubMed) (secret)
• Mutagenesis at the mRNA decoding site in the 16S ribosomal RNA using the specialized ribosome system in Escherichia coli
  Hui, The EMBO journal 1988 (secret)

UTI89_C1460 unknown protein encoded by prophage CP-933O from Escherichia coli UTI89
Aligns to 7:64 / 66 (87.9%), covers 100.0% of PF07358, 83.2 bits

• High-throughput sequencing of sorted expression libraries reveals inhibitors of bacterial cell division
  Mediati, BMC genomics 2018
  • “...minE D UTI89_C1360 minD D UTI89_C1361 minC D 1,392,0091,395,131 UTI89_C1459 exoO SR 3123 70.7 10,266.0 UTI89_C1460 S UTI89_C1461 dicB D UTI89_C1462 dicF RD UTI89_C1463 ydfC S UTI89_C1464 ydfB S UTI89_C1465 ydfA S UTI89_C1466 dicA KT UTI89_C1467 dicC R 1,961,2911,963,326 UTI89_C2055 zwf G 2036 19.0 1044.3 2,011,0102,012,850...”

Z1325 unknown protein encoded by cryptic prophage CP-933M from Escherichia coli O157:H7 EDL933
Aligns to 4:61 / 63 (92.1%), covers 98.2% of PF07358, 68.5 bits

• Global effect of RpoS on gene expression in pathogenic Escherichia coli O157:H7 strain EDL933
  Dong, BMC genomics 2009
  • “...prophage CP-933M) Z1326 3.4 0.3 5.5 0.3 -4 O-Island 44 Putative inhibitor of cell division Z1325 4.1 0.4 6.3 0.3 -5 O-Island 44 Unknown (cryptic prophage CP-933M) Z1456 12.8 0.2 13.8 0.3 -2 O-Island 45 Unknown (bacteriophage BP-933W) Z1503 8.0 0.5 10.2 0.5 -4 O-Island 45...”
• Exogenous induction of the iron dicitrate transport system of Escherichia coli K-12
  Zimmermann, Journal of bacteriology 1984
  • “...therefore not caused by growth inhibition. ThefhcA derivative Z1325 could not be induced (Table 3). Six additional MNNG-induced mutants were tested and showed...”
  • “...fecB::Mu dl(Ap lac) NB NB/Cit/Def M9/Cit/Def NB/Fluorocit/Def Z1325 fecA fecB::Mu dl(Ap lac) NB NB/Cit NB/Cit/Dip Z1342 tonBfecB::Mu dl(Ap lac) NB NB/Cit...”

Or search for genetic data about PF07358 in the Fitness Browser