Family Search for PF07383 (DUF1496)

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PF07383 hits 5 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

VPA0418 conserved hypothetical protein from Vibrio parahaemolyticus RIMD 2210633
Aligns to 35:87 / 90 (58.9%), covers 100.0% of PF07383, 89.2 bits

• Surface sensing in Vibrio parahaemolyticus triggers a programme of gene expression that promotes colonization and virulence
  Gode-Potratz, Molecular microbiology 2011
  • “...43 <VPA0227> c alkaline serine protease 20 10 3 * d 1 * 10 5 VPA0418 conserved hypothetical protein 4 3 4 3 8 6 VPA0419-20 Intergenic region 3 3 3 2 5 4 <VPA0459> collagenase 127 127 2 * 2 10 13 VPA0867 DnaJ-related protein...”

SL1344_1235 YnjH family protein from Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
STM1300 putative periplasmic protein from Salmonella typhimurium LT2
Aligns to 34:90 / 91 (62.6%), covers 98.1% of PF07383, 87.6 bits

• Fatty Acid Homeostasis Tunes Flagellar Motility by Activating Phase 2 Flagellin Expression, Contributing to Salmonella Gut Colonization
  Hoshino, Infection and immunity 2022 (secret)
• Structure-based analyses of Salmonella RcsB variants unravel new features of the Rcs regulon
  Huesa, Nucleic acids research 2021
  • “...2 fold change (WT) log 2 fold change (M88A) log 2 fold change (L108A) 1337038 SL1344_1235 gene promoter-5UTR + 32 1337044 6 to 8 TGAGAATATACTTA 3.35 1.43 2.97 844864 SL1344_0758 modA gene 5UTR + 64 844835 29 to 43 TGGGAAACCCCTGA 2.22 1.67 1979777 SL1344_1860 flhD gene...”
• Regulatory Cross Talk between Motility and Interbacterial Communication in Salmonella enterica Serovar Typhimurium
  Plitnick, Journal of bacteriology 2021 (secret)
• Genome-scale co-expression network comparison across Escherichia coli and Salmonella enterica serovar Typhimurium reveals significant conservation at the regulon level of local regulators despite their dissimilar lifestyles
  Zarrineh, PloS one 2014
  • “...From 20 genes detected as variable part in S. enterica just four genes (srfB, srfC, STM1300, STM2314) has not previously been identified as motility and flagerlla synthesis in E. coli . The other 16 genes could be detected in E. coli if the lower threshold would...”
• Uncovering a large set of genes that affect surface motility in Salmonella enterica serovar Typhimurium
  Wang, Journal of bacteriology 2006
  • “...genes flgB cheY Putative class 3 cheV mcpB mcpC STM1300 ycgR yghW yhjH Putative motility genes with profiles different from known or similar to known motility...”

YnjH / b1760 DUF1496 domain-containing protein YnjH from Escherichia coli K-12 substr. MG1655 (see paper)
b1760 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 33:89 / 90 (63.3%), covers 98.1% of PF07383, 82.5 bits

• Identification of a target gene and activating stimulus for the YpdA/YpdB histidine kinase/response regulator system in Escherichia coli
  Fried, Journal of bacteriology 2013
  • “...0.01 0.01 103 entE ynjH ygbL yahM iraP ygbK yehS b0594 b1760 b2738 b0327 b0382 b2737 b2124 110 740 130 210 330 220 1,680 60 1,860 340 580 1,030 690 16,130 0.9...”
• 18th Congress of the European Hematology Association, Stockholm, Sweden, June 13–16, 2013
  , Haematologica 2013
• Adaptation in bacterial flagellar and motility systems: from regulon members to 'foraging'-like behavior in E. coli
  Zhao, Nucleic acids research 2007
  • “...yjdA Conserved hypothetical protein Not classified 12.3 5.3 b3525 yhjH Conserved protein Unknown 9.6 1.9 b1760 ynjH Conserved hypothetical protein Unknown 6.9 7.9 b1742 ydjR Conserved hypothetical protein Unknown 4.7 4.5 b0250 ykfB CP4-6 prophage Unknown 3.7 4.0 b0764 modB Molybdate transport protein Transport of small...”
• In silico prediction and functional validation of sigma28-regulated genes in Chlamydia and Escherichia coli
  Yu, Journal of bacteriology 2006
  • “...tested for in vitro activity Gene name b0132 b0763 b1760 yadD modA ynjH b1915 b3204 b3490 b4083 yecF ptsN yhiL yjcS Function Hypothetical protein Molybdate ABC...”
• Differential gene expression for investigation of Escherichia coli biofilm inhibition by plant extract ursolic acid
  Ren, Applied and environmental microbiology 2005
  • “...and/or 30 g of ursolic acid/ml (Table 3), such as b1566, b1760, b2674, yjjS, yrfH, and yrfI. b1566 is also known as flxA, and its expression is dependent on the...”
  • “...functions cirA entE fxsA mlc osmE prlC b1194 b1321 b1566 b1760 yadN b2674 ybeD ycjF yeiE yhdM yhjH yjjS yrfG b2155 b0594 b4140 b1594 b1739 b3498 b1194 b1321...”
• Identification and mapping of self-assembling protein domains encoded by the Escherichia coli K-12 genome by use of lambda repressor fusions
  Mariño-Ramírez, Journal of bacteriology 2004
  • “...b4192 b4249 b4295 b0515 b1145 b1330 b1524 b1595 b1760 b2434 b2549 b2875 b3071 b3193 b3199 b3830 b4212 b4218 COG0393 COG1335 COG2323 COG1335 COG3132 COG1607...”

VC1744 conserved hypothetical protein from Vibrio cholerae O1 biovar eltor str. N16961
Aligns to 28:79 / 93 (55.9%), covers 84.9% of PF07383, 76.3 bits

• A conserved RNA seed-pairing domain directs small RNA-mediated stress resistance in enterobacteria
  Peschek, The EMBO journal 2019
  • “...), we have not been able to further validate posttranscriptional control of dsbA , vc1743 vc1744 , vca0996 , vc2240 , vc1485 , vc0429 , vca0447 , vca0845 , and vca0789 by MicV and/or VrrA with the reporter assays ( AppendixTableS2 ), suggesting that these genes...”

YPO2166 putative exported protein from Yersinia pestis CO92
YPTB2092 putative exported protein from Yersinia pseudotuberculosis IP 32953
Aligns to 36:95 / 96 (62.5%), covers 98.1% of PF07383, 68.1 bits

• Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression
  Rosso, BMC microbiology 2008
  • “...YPO2004 putative membrane protein 2.041 (0.002) YPTB2000 YPO2012 putative membrane protein 0.256 (< 0.001) YPTB2092 YPO2166 putative exported protein 0.671 (0.027) YPTB2114 YPO2191 hypothetical protein 0.28 (< 0.001) YPTB2148 YPO2226 hypothetical protein 1.855 (0.007) YPTB2151 (osmB) YPO2229 osmotically inducible lipoprotein B precursoR 2.229 (< 0.001) 1.413...”
• Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression
  Rosso, BMC microbiology 2008
  • “...YPTB1996 YPO2004 putative membrane protein 2.041 (0.002) YPTB2000 YPO2012 putative membrane protein 0.256 (< 0.001) YPTB2092 YPO2166 putative exported protein 0.671 (0.027) YPTB2114 YPO2191 hypothetical protein 0.28 (< 0.001) YPTB2148 YPO2226 hypothetical protein 1.855 (0.007) YPTB2151 (osmB) YPO2229 osmotically inducible lipoprotein B precursoR 2.229 (< 0.001)...”

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