Family Search for PF07759 (DUF1615)

April 2024: GapMind for amino acid biosynthesis has been updated to include newly-discovered enzymes and comparative genomics predictions (see details)

PF07759 hits 7 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YaiW / b0378 surface-exposed outer membrane lipoprotein from Escherichia coli K-12 substr. MG1655 (see 6 papers)
NP_414912 surface-exposed outer membrane lipoprotein from Escherichia coli str. K-12 substr. MG1655
P77562 Uncharacterized protein YaiW from Escherichia coli (strain K12)
b0378 predicted DNA-binding transcriptional regulator from Escherichia coli str. K-12 substr. MG1655
Aligns to 49:364 / 364 (86.8%), covers 99.4% of PF07759, 497.8 bits

• Enteric YaiW is a surface-exposed outer membrane lipoprotein that affects sensitivity to an antimicrobial peptide.
  Arnold, Journal of bacteriology 2014
  • GeneRIF: Authors found that both YaiW and SbmA positively affect the uptake of proline-rich Bac7 peptides, suggesting a possible connection between their cellular functions.
• Comparative Analysis of Outer Membrane Vesicle Isolation Methods With an Escherichia coli tolA Mutant Reveals a Hypervesiculating Phenotype With Outer-Inner Membrane Vesicle Content
  Reimer, Frontiers in microbiology 2021
  • “...in tolA UNKNOWN P0ADE6 kbp Potassium binding protein Kbp tolA 0.037 INF Increased in tolA P77562 yaiW Uncharacterized protein YaiW tolA 0.00028 INF Increased in tolA P0ADA5 yajG Uncharacterized lipoprotein YajG BOTH <0.00010 1.2 Increased in tolA P75818 ybjP Uncharacterized lipoprotein YbjP BOTH 0.017 9.5 Increased...”
• Genome-wide analysis of lipoprotein expression in Escherichia coli MG1655
  Brokx, Journal of bacteriology 2004
  • “...Anaerobic RT-PCR Microarrayb RT-PCR Microarrayb RT-PCR b0193 b0227 b0378 b0689 b0984 b1023 b1310 b2062 b2123 b2138 b2270 b2376 b2505 b2636 b2971 b3014 b3265...”

Z0474 orf, hypothetical protein from Escherichia coli O157:H7 EDL933
Aligns to 49:364 / 364 (86.8%), covers 99.4% of PF07759, 496.3 bits

• Characterizing the Escherichia coli O157:H7 proteome including protein associations with higher order assemblies
  Pieper, PloS one 2011
  • “...38547 L (IM or OM) unkn 52 0 FVGC 25 D 2 uncharacterized protein YaiW Z0474 yaiW 40416 L (IM or OM) unkn 52 0 LAGC 21 S A : Categories. 1, verified lipoprotein (three listed out of >20); 2, conserved Sp II signal peptidase motif...”

SEN_RS01845 surface-exposed outer membrane lipoprotein YaiW from Salmonella enterica subsp. enterica serovar Enteritidis str.
Aligns to 49:364 / 364 (86.8%), covers 99.7% of PF07759, 493.6 bits

• Salmonella Enteritidis Isolate Harboring Multiple Efflux Pumps and Pathogenicity Factors, Shows Absence of O Antigen Polymerase Gene
  Jones-Dias, Frontiers in microbiology 2016
  • “...(hypothetical protein) Leu1Met 177 401018 C A prpE (acetyl-CoA synthetase) Arg9Ser 132 411602 T G SEN_RS01845 (hypothetical protein) Trp209Gly 58 561577 T C SEN_RS02560 (MFS transporter) Ser333Pro 68 659902 T G dpiB (sensor histidine kinase) Tyr3Asp 52 988620 G C SEN_RS04610 (hypothetical protein) Ala89Pro 130 1044895...”

JNO42_04025 DUF1615 domain-containing protein from Pseudomonas putida
Aligns to 35:350 / 350 (90.3%), covers 100.0% of PF07759, 487.1 bits

• Plant growth-promoting effect and genomic analysis of the P. putida LWPZF isolated from C. japonicum rhizosphere
  Jin, AMB Express 2022
  • “...( LWPZF JNO42_04035 to PAO1 PA2409 ). Two opening reading frames (ORFs) of JNO42_04020 and JNO42_04025 , upstream of the membrane protein gene cluster JNO42_04030 JNO42_04065 were unique and had no homologs among the PVD genes in PAO1. JNO42_04020 , encodes an isochorismatase family protein. The...”

PP_RS19805 DUF1615 domain-containing protein from Pseudomonas putida KT2440
Aligns to 35:350 / 350 (90.3%), covers 100.0% of PF07759, 486.8 bits

• Plant growth-promoting effect and genomic analysis of the P. putida LWPZF isolated from C. japonicum rhizosphere
  Jin, AMB Express 2022
  • “...of these two genes were highly similar to those of the PVD genes, PP_RS19810 and PP_RS19805 , in P. putida KT2440. Among the six genes encoding NRPS in LWPZF, only the chromophore precursor synthetase gene, pvdL (JNO42_01860) were highly similar (70.7%) to the corresponding gene in...”

XOO4042 hypothetical protein from Xanthomonas oryzae pv. oryzae KACC10331
Q5GVH7 DUF1615 domain-containing protein from Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85)
Aligns to 46:363 / 363 (87.6%), covers 99.4% of PF07759, 461.8 bits

• Identification of phenolic compounds that suppress the virulence of Xanthomonas oryzae on rice via the type III secretion system
  Fan, Molecular plant pathology 2017 (secret)
• Genome Wide Analysis of the Potato Soft Rot Pathogen Pectobacterium carotovorum Strain ICMP 5702 to Predict Novel Insights into Its Genetic Features.
  Mallick, The plant pathology journal 2022
  • “...Type III helper protein HopAJ1 Peg.2009 442 yscN Q9Z7J8 H(+)-transporting two-sector ATPase Peg.479 363 XOO4042 Q5GVH7 Uncharacterized protein Peg.3984 3,056 aroK Q989M4 Shikimate kinase (SK) Peg.2376 208 hrpW Q60236 Harpin secretion protein HrpW Peg.3019 113 ROD_09131 D2TRA0 Conserved hypothetical prophage protein Peg.1487 555 hopAK1 Q87XS5 Type...”

A1S_2495 hypothetical protein from Acinetobacter baumannii ATCC 17978
Aligns to 52:396 / 402 (85.8%), covers 100.0% of PF07759, 394.5 bits

• A Moraxella catarrhalis two-component signal transduction system necessary for growth in liquid media affects production of two lysozyme inhibitors
  Joslin, Infection and immunity 2015
  • “...(Psychrobacter arcticus 273-4) Hypothetical protein A1S_2495 (Acinetobacter baumannii ATCC 17978) Gamma-glutamyl aminopeptidase (Neisseria meningitidis)...”

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