PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF08213 (DUF1713)

PF08213.11 hits 6 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

NP_079614 aurora kinase A-interacting protein from Mus musculus
Aligns to 128:160 / 200 (16.5%), covers 97.0% of PF08213, 48.9 bits

AKIP_HUMAN / Q9NWT8 Aurora kinase A-interacting protein; AURKA-interacting protein; 28S ribosomal protein S38, mitochondrial; MRP-S38; Mitochondrial small ribosomal subunit protein mS38 from Homo sapiens (Human) (see 3 papers)
NP_060370 aurora kinase A-interacting protein from Homo sapiens
Aligns to 127:159 / 199 (16.6%), covers 93.9% of PF08213, 48.3 bits

COX24_SCHPO / Q9P7H5 Mitochondrial mRNA-processing protein cox24 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
Aligns to 143:175 / 175 (18.9%), covers 97.0% of PF08213, 46.3 bits

ML2428A ML2428A. Orthologue of M. tuberculosis Rv0500B. Conserved hypothetical protein, strongly basic. Also similar to Streptomyces coelicolor SCE68.25c, hypothetical protein, len : 32 aa; unknown function, possible small, lysine-rich protein. FASTA score: gp|AL079345|AL079345_25 Streptomyces coelicolor (32 aa) E(): 1.7e-07; 93.103% identity in 29 aa overlap (NCBI ptt file) from Mycobacterium leprae TN
Aligns to 1:33 / 33 (100.0%), covers 100.0% of PF08213, 46.0 bits

COX24_YEAST / P32344 Mitochondrial mRNA-processing protein COX24; Mitochondrial small ribosomal subunit protein mS38 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 4 papers)
NP_013305 Qri5p from Saccharomyces cerevisiae S288C
YLR204W Mitochondrial inner membrane protein, required for accumulation of spliced COX1 mRNA; may have an additional role in translation of COX1 mRNA (RefSeq) from Saccharomyces cerevisiae
Aligns to 77:109 / 111 (29.7%), covers 97.0% of PF08213, 45.0 bits

SCO3327 hypothetical protein (NCBI) from Streptomyces coelicolor A3(2)
Aligns to 1:32 / 32 (100.0%), covers 90.9% of PF08213, 37.4 bits

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory