PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF08590 (DUF1771)

PF08590.10 hits 10 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YLL3_SCHPO / Q9UTP4 Smr domain-containing protein C11H11.03c from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
SPAC11H11.03c SMR and DUF1771 domain protein (RefSeq) from Schizosaccharomyces pombe
Aligns to 4:67 / 206 (31.1%), covers 100.0% of PF08590, 72.2 bits

NP_001020088 NEDD4-binding protein 2 from Mus musculus
Aligns to 1527:1590 / 1678 (3.8%), covers 100.0% of PF08590, 70.0 bits

XP_016863886 NEDD4-binding protein 2 isoform X2 from Homo sapiens
Aligns to 1734:1797 / 1885 (3.4%), covers 100.0% of PF08590, 68.8 bits

N4BP2_HUMAN / Q86UW6 NEDD4-binding protein 2; N4BP2; BCL-3-binding protein; EC 3.-.-.- from Homo sapiens (Human) (see paper)
NP_060647 NEDD4-binding protein 2 isoform 1 from Homo sapiens
Aligns to 1619:1682 / 1770 (3.6%), covers 100.0% of PF08590, 68.7 bits

CID7_ARATH / O64843 Polyadenylate-binding protein-interacting protein 7; PABP-interacting protein 7; Poly(A)-binding protein-interacting protein 7; PAM2-containing protein CID7; Protein CTC-INTERACTING DOMAIN 7 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
AT2G26280 CID7; ATP binding / damaged DNA binding / protein binding (RefSeq) from Arabidopsis thaliana
Aligns to 408:471 / 567 (11.3%), covers 100.0% of PF08590, 65.9 bits

YP199_YEAST / Q08954 Smr domain-containing protein YPL199C from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 2 papers)
NP_015125, YPL199C Ypl199cp (RefSeq) from Saccharomyces cerevisiae
Aligns to 26:89 / 240 (26.7%), covers 100.0% of PF08590, 65.2 bits

Y5872_ARATH / O65573 SMR domain-containing protein At5g58720; PRL1-interacting protein PIPC from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT5G58720 PRLI-interacting factor, putative (RefSeq) from Arabidopsis thaliana
Aligns to 356:419 / 519 (12.3%), covers 100.0% of PF08590, 55.7 bits

SDE5_ARATH / Q9LUQ3 Putative nuclear RNA export factor SDE5; Protein SILENCING DEFECTIVE 5 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
Aligns to 328:391 / 490 (13.1%), covers 93.8% of PF08590, 48.0 bits

CG7139, NP_649378 uncharacterized protein from Drosophila melanogaster
Aligns to 808:871 / 969 (6.6%), covers 95.3% of PF08590, 47.0 bits

AT5G23520 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 243:306 / 435 (14.7%), covers 93.8% of PF08590, 43.3 bits

Or search for genetic data about PF08590 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory