PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF08590 (DUF1771)

PF08590.10 hits 8 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YLL3_SCHPO / Q9UTP4 Smr domain-containing protein C11H11.03c from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
SPAC11H11.03c SMR and DUF1771 domain protein (RefSeq) from Schizosaccharomyces pombe
Aligns to 4:67 / 206 (31.1%), covers 100.0% of PF08590, 72.2 bits

XP_016863886 NEDD4-binding protein 2 isoform X2 from Homo sapiens
Aligns to 1734:1797 / 1885 (3.4%), covers 100.0% of PF08590, 68.8 bits

N4BP2_HUMAN / Q86UW6 NEDD4-binding protein 2; N4BP2; EC 3.-.-.-; BCL-3-binding protein from Homo sapiens (Human) (see paper)
NP_060647 NEDD4-binding protein 2 isoform 1 from Homo sapiens
Aligns to 1619:1682 / 1770 (3.6%), covers 100.0% of PF08590, 68.7 bits

CID7_ARATH / O64843 Polyadenylate-binding protein-interacting protein 7; PABP-interacting protein 7; Poly(A)-binding protein-interacting protein 7; PAM2-containing protein CID7; Protein CTC-INTERACTING DOMAIN 7 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
Aligns to 408:471 / 567 (11.3%), covers 100.0% of PF08590, 65.9 bits

YP199_YEAST / Q08954 Smr domain-containing protein YPL199C from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 2 papers)
YPL199C Ypl199cp (RefSeq) from Saccharomyces cerevisiae
Aligns to 26:89 / 240 (26.7%), covers 100.0% of PF08590, 65.2 bits

Y5872_ARATH / O65573 SMR domain-containing protein At5g58720; PRL1-interacting protein PIPC from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 356:419 / 519 (12.3%), covers 100.0% of PF08590, 55.7 bits

SDE5_ARATH / Q9LUQ3 Putative nuclear RNA export factor SDE5; Protein SILENCING DEFECTIVE 5 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
Aligns to 328:391 / 490 (13.1%), covers 93.8% of PF08590, 48.0 bits

CG7139 uncharacterized protein from Drosophila melanogaster
Aligns to 808:871 / 969 (6.6%), covers 95.3% of PF08590, 47.0 bits

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory