Family Search for PF08956 (DUF1869)

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PF08956 hits 3 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YoaG / b1796 DUF1869 domain-containing protein YoaG from Escherichia coli K-12 substr. MG1655 (see 4 papers)
YOAG_ECOLI / P64496 Protein YoaG from Escherichia coli (strain K12)
Z2838 orf, hypothetical protein from Escherichia coli O157:H7 EDL933
UTI89_C1994 hypothetical protein YoaG from Escherichia coli UTI89
b1796 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
c2202 Hypothetical protein yoaG from Escherichia coli CFT073
ECs2505 hypothetical protein from Escherichia coli O157:H7 str. Sakai
EC042_RS10415 DUF1869 domain-containing protein from Escherichia coli 042
Aligns to 2:60 / 60 (98.3%), covers 98.3% of PF08956, 111.4 bits

• subunit: Homodimer.
• Disruption of rcsB by a duplicated sequence in a curli-producing Escherichia coli O157:H7 results in differential gene expression in relation to biofilm formation, stress responses and metabolism
  Sharma, BMC microbiology 2017
  • “...ydeH Z2292 Unknown +2.69 2.0E-04 ydeF Z2308 Unknown +2.83 2.7E-06 Z2421 Unknown +1.79 0.03 yoaG Z2838 Unknown +2.54 0.02 Z2839 Unknown +2.36 0.04 Z2893 Unknown 1.61 0.01 rcnB Z3275 Putative nickel/cobalt efflux protein 1.61 0.02 ypeC Z3656 Unknown 23.74 1.9E-17 ypfG Z3722 Unknown 4.58 9.0E-09 Z3965...”
• Metabolic Requirements of Escherichia coli in Intracellular Bacterial Communities during Urinary Tract Infection Pathogenesis
  Conover, mBio 2016
  • “...acid PA degradation in bacteria UTI89_C0587 3.658836126 MbtH-like protein (domain found in antibiotic synthesis proteins) UTI89_C1994 yoaG 3.380447626 Hypothetical protein UTI89_C5112 ybcS2 3.232487202 Bacteriophage lambda lysozyme-like protein UTI89_C3386 gspC 2.910385132 Putative type II secretion protein GspC UTI89_C1336 sitD 2.890235424 Transmembrane subunit, of PBP-dependent ABC transporters involved...”
• 18th Congress of the European Hematology Association, Stockholm, Sweden, June 13–16, 2013
  , Haematologica 2013
• Global gene expression profiling of the asymptomatic bacteriuria Escherichia coli strain 83972 in the human urinary tract
  Roos, Infection and immunity 2006
  • “...and in vitro urinea Gene Code c1686 b1476 b1226 b1796 b4209 b1223 ECs5443 b1797 Z2001 b1541 Z0893 b1227 b1225 b4013 b2941 b2552 c4141 b1475 b0873 b3240 b3556...”
  • “...be induced by nitrate, together with the yoaG gene (b1796) (15), which also showed significant up-regulation in all patients (Table 1). ahpC, the gene encoding...”
• YdgG (TqsA) controls biofilm formation in Escherichia coli K-12 through autoinducer 2 transport
  Herzberg, Journal of bacteriology 2006
  • “...4.9 4.9 4.6 4.6 4.6 4.6 4.3 b1228 ytfA yoaG yjgN b1228 b4205 b1796 b4257 4.3 4 4 4 yjcF yhaC ygfF yfdU yfaE b4066 b3121 b2902 b2373 b2236 4 4 4 4 4 yfaA yadS...”
• Hierarchical control of anaerobic gene expression in Escherichia coli K-12: the nitrate-responsive NarX-NarL regulatory system represses synthesis of the fumarate-responsive DcuS-DcuR regulatory system
  Goh, Journal of bacteriology 2005
  • “...These apparently activated genes were yeaR-yoaG (b1797 and b1796), and the apparently repressed genes were yegE (b2067) and yeiTA (b2146 and b2147). We did...”
• Genome-wide analysis of the response to nitric oxide in uropathogenic Escherichia coli CFT073
  Mehta, Microbial genomics 2015
  • “...Fold change * hlyC c3569 Haemolysin C 253.48 ndk c3041 Nucleoside diphosphate kinase 201.23 yoaG c2202 Hypothetical protein YoaG 167.79 yeaR c2204 Hypothetical protein YeaR 160.21 c2203 c2203 Hypothetical protein 147.10 c2201 c2201 Hypothetical protein 142.23 ytfE c5308 Hypothetical protein YtfE 69.63 hcp c1006 Prismane protein...”
• Gene expression induced in Escherichia coli O157:H7 upon exposure to model apple juice
  Bergholz, Applied and environmental microbiology 2009
  • “...ECs2281 ECs2283 ECs2289 ECs2292 ECs2303 ECs2392 ECs2449 ECs2505 ECs2506 ECs2536 ECs2544 ECs2558 ECs2581 ECs2614 ECs2622 ECs2623 ECs2692 ECs2714 ECs2737 ECs2758...”
• Overexpression of the third H-NS paralogue H-NS2 compensates fitness loss in hns mutants of the enteroaggregative Escherichia coli strain 042
  Prieto, Scientific reports 2020
  • “...EC042_RS06755 (respiratory nitrate reductase subunit gamma NarI) 12.8 3.1 EC042_RS03510 (DUF1266 domain-containing protein) 8.2 5.0 EC042_RS10415 (DUF1869 domain-containing protein) 6.7 4.9 EC042_RS16380 (EscR/YscR/HrcR family type III secretion system export apparatus protein) 6.3 2.8 EC042_RS22730 (hypothetical protein) 5.4 5.0 EC042_RS19330 (nitrite reductase large subunit) 4.9 2.9 EC042_RS19990...”

STM1272 putative cytoplasmic protein from Salmonella typhimurium LT2
Aligns to 2:60 / 60 (98.3%), covers 98.3% of PF08956, 111.0 bits

• Stress response, amino acid biosynthesis and pathogenesis genes expressed in Salmonella enterica colonizing tomato shoot and root surfaces
  Han, Heliyon 2020
  • “...synthetase associated 0.006 ygbA STM2860 Nitrous oxide-stimulated promoter; NsrR regulon 3.5 0.002 3.5 0.003 yoaG STM1272 DUF1869 domain-containing protein; NsrR regulon gene 0.004 0.006 ygbE STM2932 inner membrane protein 1.5 0.002 1.7 0.003 yhaK STM3236 pirin domain protein 2.1 0.002 1.4 0.003 yhcN STM3361 Putative outer...”

Kvar_1938 hypothetical protein from Klebsiella variicola At-22
Aligns to 52:108 / 109 (52.3%), covers 91.5% of PF08956, 23.7 bits

• Clinical and Bacterial Characteristics of Klebsiella pneumoniae Affecting 30-Day Mortality in Patients With Bloodstream Infection
  Wu, Frontiers in cellular and infection microbiology 2021
  • “...factors were included in all four sets of analyses. b The strain co-harbored pulM, fliY, Kvar_1938, Kvar_0779, mrkF, and KPK_0838 genes simultaneously. c The strain co-harbored pulC, KPK_2690, Kvar_1936, Kvar_0771, and Kvar_0795 genes simultaneously. APACHE, Acute Physiology and Chronic Health Evaluation; OR, odds ratio; CI, confidence...”

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