PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF09922 (DUF2154)

PF09922.9 hits 9 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

lmo1020 similar to B. subtilis YvqF protein (NCBI ptt file) from Listeria monocytogenes EGD-e
Aligns to 122:234 / 237 (47.7%), covers 100.0% of PF09922, 126.0 bits

lin1019 similar to B. subtilis YvqF protein (NCBI ptt file) from Listeria innocua Clip11262
Aligns to 122:234 / 237 (47.7%), covers 100.0% of PF09922, 125.1 bits

spr0342 Conserved hypothetical protein (NCBI ptt file) from Streptococcus pneumoniae R6
Aligns to 114:229 / 232 (50.0%), covers 100.0% of PF09922, 119.3 bits

LIAF_BACSU / O32199 Protein LiaF from Bacillus subtilis (strain 168) (see 6 papers)
NP_391190 LiaR negative effector LiaF from Bacillus subtilis subsp. subtilis str. 168
Aligns to 126:238 / 241 (46.9%), covers 100.0% of PF09922, 119.2 bits

SACOL1944 hypothetical protein (NCBI) from Staphylococcus aureus subsp. aureus COL
SA1702 hypothetical protein (NCBI) from Staphylococcus aureus subsp. aureus N315
SAV1886 hypothetical protein (NCBI) from Staphylococcus aureus subsp. aureus Mu50
USA300HOU_1882 hypothetical membrane protein (RefSeq) from Staphylococcus aureus subsp. aureus USA300_TCH1516
Aligns to 119:230 / 233 (48.1%), covers 100.0% of PF09922, 105.6 bits

SPy1623 conserved hypothetical protein (NCBI ptt file) from Streptococcus pyogenes M1 GAS
Aligns to 132:228 / 228 (42.5%), covers 83.3% of PF09922, 103.3 bits

llmg_1650 putative secreted protein (NCBI) from Lactococcus lactis subsp. cremoris MG1363
Aligns to 79:188 / 191 (57.6%), covers 78.9% of PF09922, 58.1 bits

LBA0404 hypothetical protein (RefSeq) from Lactobacillus acidophilus NCFM
Aligns to 151:248 / 252 (38.9%), covers 62.3% of PF09922, 35.3 bits

NP_722171 hypothetical protein from Streptococcus mutans UA159
Aligns to 127:224 / 228 (43.0%), covers 68.4% of PF09922, 32.0 bits

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory