PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF09995 (DUF2236)

PF09995.9 hits 26 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

MAP0660 hypothetical protein (NCBI) from Mycobacterium avium subsp. paratuberculosis str. k10
Aligns to 64:300 / 357 (66.4%), covers 99.6% of PF09995, 202.0 bits

Rv0826 hypothetical protein (NCBI) from Mycobacterium tuberculosis H37Rv
Aligns to 59:295 / 351 (67.5%), covers 99.6% of PF09995, 196.0 bits

WP_083036515 DUF2236 domain-containing protein from Mycolicibacter algericus DSM 45454
Aligns to 18:242 / 284 (79.2%), covers 96.0% of PF09995, 195.7 bits

PA4734 hypothetical protein (NCBI) from Pseudomonas aeruginosa PAO1
Aligns to 42:290 / 293 (85.0%), covers 100.0% of PF09995, 195.6 bits

Mb0849 CONSERVED HYPOTHETICAL PROTEIN (NCBI) from Mycobacterium bovis AF2122/97
Aligns to 59:295 / 351 (67.5%), covers 98.7% of PF09995, 194.6 bits

PP4703 conserved hypothetical protein (NCBI ptt file) from Pseudomonas putida KT2440
Aligns to 42:272 / 289 (79.9%), covers 100.0% of PF09995, 187.6 bits

HZ99_22295 DUF2236 domain-containing protein from Pseudomonas fluorescens
Aligns to 42:272 / 289 (79.9%), covers 100.0% of PF09995, 184.9 bits

Rv1645c hypothetical protein (NCBI) from Mycobacterium tuberculosis H37Rv
Mb1672c CONSERVED HYPOTHETICAL PROTEIN (NCBI) from Mycobacterium bovis AF2122/97
Aligns to 19:254 / 351 (67.2%), covers 97.4% of PF09995, 180.1 bits

MSMEG_3781 hypothetical protein (NCBI) from Mycobacterium smegmatis str. MC2 155
Aligns to 22:257 / 345 (68.4%), covers 97.8% of PF09995, 177.2 bits

AO090005000013 No description from Aspergillus oryzae RIB40
Aligns to 54:276 / 305 (73.1%), covers 92.1% of PF09995, 176.4 bits

WP_085129074 DUF2236 domain-containing protein from Mycolicibacter engbaekii
Aligns to 37:272 / 304 (77.6%), covers 97.8% of PF09995, 168.9 bits

MAH_RS21070 DUF2236 domain-containing protein from Mycobacterium avium subsp. hominissuis TH135
Aligns to 43:276 / 308 (76.0%), covers 96.9% of PF09995, 168.9 bits

Rv0276 hypothetical protein (NCBI) from Mycobacterium tuberculosis H37Rv
Aligns to 42:274 / 306 (76.1%), covers 96.9% of PF09995, 168.8 bits

Mb2261 CONSERVED HYPOTHETICAL PROTEIN (NCBI) from Mycobacterium bovis AF2122/97
Rv2237 hypothetical protein (NCBI) from Mycobacterium tuberculosis H37Rv
Aligns to 1:224 / 255 (87.8%), covers 93.4% of PF09995, 147.1 bits

CC2570 hypothetical protein (NCBI ptt file) from Caulobacter crescentus CB15
Aligns to 31:260 / 299 (76.9%), covers 98.7% of PF09995, 145.0 bits

MAV_2862 hypothetical protein (NCBI) from Mycobacterium avium 104
Aligns to 55:302 / 369 (67.2%), covers 99.6% of PF09995, 143.2 bits

MAP1566 hypothetical protein (NCBI) from Mycobacterium avium subsp. paratuberculosis str. k10
Aligns to 43:290 / 357 (69.5%), covers 99.6% of PF09995, 143.0 bits

A1S_0172 hypothetical protein (RefSeq) from Acinetobacter baumannii ATCC 17978
Aligns to 65:307 / 351 (69.2%), covers 92.1% of PF09995, 113.2 bits

FFUJ_00037 uncharacterized protein from Fusarium fujikuroi IMI 58289
Aligns to 111:358 / 461 (53.8%), covers 96.0% of PF09995, 105.5 bits

nfa21740 hypothetical protein (NCBI) from Nocardia farcinica IFM 10152
Aligns to 123:362 / 413 (58.1%), covers 89.9% of PF09995, 78.6 bits

LCP_STRK3 / Q3L8N0 Rubber oxygenase; Latex clearing protein; b-type cytochrome Lcp; EC 1.13.-.- from Streptomyces sp. (strain K30) (see 5 papers)
Q3L8N0 endo-cleaving rubber dioxygenase Lcp (EC 1.13.11.87) from Streptomyces sp. (strain K30) (see 6 papers)
Aligns to 127:363 / 407 (58.2%), covers 89.0% of PF09995, 69.6 bits

SCO6780 secreted protein (NCBI) from Streptomyces coelicolor A3(2)
Aligns to 118:354 / 401 (59.1%), covers 91.2% of PF09995, 65.2 bits

CG31344 uncharacterized protein from Drosophila melanogaster
Aligns to 90:342 / 403 (62.8%), covers 66.1% of PF09995, 56.8 bits

LOC105675090 uncharacterized protein LOC105675090 from Linepithema humile
Aligns to 59:232 / 344 (50.6%), covers 55.9% of PF09995, 51.2 bits

MPAB_PENBR / F1DBA8 Mycophenolic acid synthesis protein B from Penicillium brevicompactum (see 3 papers)
Aligns to 78:349 / 392 (69.4%), covers 83.7% of PF09995, 37.8 bits

LOC105669905 uncharacterized protein LOC105669905 from Linepithema humile
Aligns to 108:391 / 438 (64.8%), covers 50.2% of PF09995, 30.2 bits

Or search for genetic data about PF09995 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory