Family Search for PF11187 (Mbeg1-like)
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Running HMMer for PF11187
PF11187 hits 18 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
BL0787 narrowly conserved hypothetical protein from Bifidobacterium longum NCC2705
Aligns to 88:315 / 373 (61.1%), covers 99.6% of PF11187, 303.2 bits
- The pyrE Gene as a Bidirectional Selection Marker in Bifidobacterium Longum 105-A
Sakaguchi, Bioscience of microbiota, food and health 2013 - “...longum 105-A wild-type and B. longum 105-A pyrE knockout mutants. The region flanking pyrD , BL0787, was amplified by PCR ( Table 2 , No.4). Lane M indicates the DNA marker, - Eco T14I, with the following size order from top to bottom: 19,329 bp, 7,743...”
spr1475 Hypothetical protein from Streptococcus pneumoniae R6
SPD_1447 hypothetical protein from Streptococcus pneumoniae D39
Aligns to 74:299 / 357 (63.3%), covers 99.1% of PF11187, 302.8 bits
- Penicillin induces alterations in glutamine metabolism in Streptococcus pneumoniae
El, Scientific reports 2017 - “...transporter substrate-binding protein 1.06 1.06 1.13 1.67 1.86 spr1467 rpsO 30S ribosomal protein S15 1.11 spr1475 hypothetical protein 1.00 spr1527 ABC-SBP sugar ABC transporter substrate-binding protein 1.32 spr1528 PTS-EII PTS system transporter subunit IIBC 1.42 spr1536 nanA neuraminidase A 1.58 2.00 2.58 spr1630 hypothetical protein 1.08...”
- Pivotal Roles for Ribonucleases in Streptococcus pneumoniae Pathogenesis
Sinha, mBio 2021 - “...asnS , rpsF 2.00 0.00019 SPD_SR80 b spd_1441 , spd_1442 6.45 1.74E24 SPD_SR81 spd_1448 , spd_1447 4.30 1.11E09 SPD_SR82 spd_1455 , spd_1454 2.74 5.50E12 SPD_SR88 b spd_1605 , spd_1604 3.84 2.60E17 SPD_SR100 pbp2A , secE 17.9 5.51E75 SPD_SR114 c cbpD , spd_2027 2.19 3.88E06 SPD_SR116 spd_2043...”
- Redefining the Small Regulatory RNA Transcriptome in Streptococcus pneumoniae Serotype 2 Strain D39
Sinha, Journal of bacteriology 2019 - “...spd_1383 spd_1426, spd_1425 spd_1441, spd_1442 spd_1448, spd_1447 spd_1455, spd_1454 recG, spd_1506 spd_1578, spd_1577 spd_1580, spd_1582 spd_1605, spd_1604...”
- Inhibition of Autolysis by Lipase LipA in Streptococcus pneumoniae Sepsis
Kim, Molecules and cells 2017 - “...determined. LipA and autolysin (LytA) levels were determined by qPCR and western blotting. S. pneumoniae Spd_1447 in the D39 (type 2) strain was identified as a lipase (LipA). In the sepsis model, but not in the pneumonia model, mice infected with the lipA displayed higher mortality...”
- “...uptake by this cell type ( Rollof et al., 1988 ). In this study, the Spd_1447 protein was characterized as a lipase and named LipA. Unlike other pathogen lipases, the S. pneumoniae LipA was not detected in pneumococcal culture, suggesting that this lipase may play a...”
SSA_1686 hypothetical protein from Streptococcus sanguinis SK36
Aligns to 79:303 / 404 (55.7%), covers 99.1% of PF11187, 292.1 bits
LBA0019 hypothetical protein from Lactobacillus acidophilus NCFM
Aligns to 74:299 / 408 (55.4%), covers 99.6% of PF11187, 283.0 bits
- S-layer associated proteins contribute to the adhesive and immunomodulatory properties of Lactobacillus acidophilus NCFM
Klotz, BMC microbiology 2020 - “..., phosphoribosylformylglycinamidine synthase subunit purS and four hypothetical proteins. Remarkably, the most notably downregulated gene, lba0019 , was the same for NCK2441, NCK2530, and NCK2608 with Log2 ratios of 0.9, 1.7, and2.9, respectively. This gene encodes an uncharacterized protein predicted to contain an alpha/beta hydrolase fold...”
- “...interactions [ 33 ]. Surprisingly, in comparison to the parent, the most significantly downregulated gene, lba0019 , was the same for all three strains. This gene likely encodes an esterase, and is co-transcribed with a putative membrane protein. Esterases are a type of hydrolase enzyme which...”
HMPREF0389_01465 DUF2974 domain-containing protein from Filifactor alocis ATCC 35896
Aligns to 80:303 / 363 (61.7%), covers 99.1% of PF11187, 277.2 bits
- Proteome variation among Filifactor alocis strains
Aruni, Proteomics 2012 - “...Acetyl ornithine transaminase 43.5 182/0.44 19 C-9.97 EC-0.02 AA transfer class 3 domain Nonsecretory 25. HMPREF0389_01465 Conserved hypothetical protein 41.5 55/0.16 8 C-7.5 EC-0.73 Hydrolase domain Nonsecretory 26. HMPREF0389_000744 Butryl coA dehydrogenase 41.25 64/0.16 12 C-7.50 EC-0.73 Acetyl coA DH1 and DH2 domain Nonsecretory 27. HMPREF0389_00745...”
- “...protein 34. HMPREF0389_00538 Processive diacylglycerol glucosyl transferase 42.2 11/0.05 2 Unknown MGDG domain Nonsecretory 35. HMPREF0389_01465 Conserved hypothetical protein 41.5 29/0.13 4 C-7.5 EC-0.73 Hydrolase domain Nonsecretory 36. HMPREF0389_00744 Butryl coA dehydrogenase 41.25 11/0.07 2 C-7.5 EC-0.73 Acetyl coA DH1 and DH2 domain Nonsecretory 37. HMPREF0389_00745...”
LBA0860 hypothetical protein from Lactobacillus acidophilus NCFM
Aligns to 80:301 / 537 (41.3%), covers 99.6% of PF11187, 242.5 bits
CJE1115 hypothetical protein from Campylobacter jejuni RM1221
Aligns to 69:223 / 500 (31.0%), covers 51.8% of PF11187, 33.9 bits
- Bioinformatic Analysis of the Campylobacter jejuni Type VI Secretion System and Effector Prediction
Robinson, Frontiers in microbiology 2021 - “...CJ488_0953 169 CJ488_0954 192 CJ488_0955 506 CJ488_0956 90 CJ488_0957 507 Lipase (class 3) domain-containing protein CJE1115 64 A0W69_09355 62 CJ488_0958 130 CJ488_0959 178 CJ488_0960 41 CJ488_0961 225 Lipase (class 3) domain-containing protein CJ488_0962 195 Phage lysozyme-like containing protein CJ488_0963 119 CJ488_0964 1310 CJE1137 98 A0W69_09370 94...”
- “...the T6SS operon ( Figure 3 ), with the former sharing homology to the proteins CJE1115 (64% aa identity) and A0W69_09355 (62% aa identity) from RM1221 and pCJDM202, respectively. Within our local C. jejuni database, 108 out of the 512 (21.09%) genomes were found to possess...”
OA57_07455 calcium-binding protein from Chelonobacter oris
Aligns to 48:148 / 717 (14.1%), covers 36.6% of PF11187, 33.2 bits
LOC110097793 uncharacterized protein LOC110097793 from Dendrobium catenatum
Aligns to 279:374 / 480 (20.0%), covers 34.4% of PF11187, 32.1 bits
A0W69_09355 Mbeg1-like protein from Campylobacter jejuni
Aligns to 96:254 / 531 (29.9%), covers 51.8% of PF11187, 31.0 bits
- Bioinformatic Analysis of the Campylobacter jejuni Type VI Secretion System and Effector Prediction
Robinson, Frontiers in microbiology 2021 - “...CJ488_0954 192 CJ488_0955 506 CJ488_0956 90 CJ488_0957 507 Lipase (class 3) domain-containing protein CJE1115 64 A0W69_09355 62 CJ488_0958 130 CJ488_0959 178 CJ488_0960 41 CJ488_0961 225 Lipase (class 3) domain-containing protein CJ488_0962 195 Phage lysozyme-like containing protein CJ488_0963 119 CJ488_0964 1310 CJE1137 98 A0W69_09370 94 CJ488_0965 422...”
- “...3 ), with the former sharing homology to the proteins CJE1115 (64% aa identity) and A0W69_09355 (62% aa identity) from RM1221 and pCJDM202, respectively. Within our local C. jejuni database, 108 out of the 512 (21.09%) genomes were found to possess the protein CJ488_0957 (average per...”
LOC109330390 lipase-like from Lupinus angustifolius
Aligns to 81:234 / 357 (43.1%), covers 46.0% of PF11187, 27.3 bits
CBO2038 exported calcium-binding glycoprotein from Clostridium botulinum A str. ATCC 3502
Aligns to 619:786 / 825 (20.4%), covers 54.0% of PF11187, 27.3 bits
BFP66_RS01095 Mbeg1-like protein from Streptococcus suis
Aligns to 77:193 / 413 (28.3%), covers 37.9% of PF11187, 26.0 bits
BRADO6535 hypothetical protein from Bradyrhizobium sp. ORS278
Aligns to 45:154 / 663 (16.6%), covers 44.2% of PF11187, 24.8 bits
- Identification and Validation of Reference Genes for Expression Analysis in Nitrogen-Fixing Bacteria under Environmental Stress
Parks, Life (Basel, Switzerland) 2022 - “...ORS278 and BTAi1, except bll6396 which encodes a putative 2-dehydropantoate 2-reductase. For ORS278, three genes BRADO6535, encoding a hypothetical protein, BRADO0162, encoding a phospholipid N-methyltransferase, and BRADO6616, encoding a putative oxidoreductase, were constitutively expressed during the day and night cycle ( Table 2 ). The target...”
- “...virulence factor MviN-like protein 0.3 0.8 BRADO7042 (bll6306) putative glycosyl transferase, group 1 0.6 0.2 BRADO6535 ( blr3561 ) hypothetical protein 0.8 0.3 BRADO0162 ( bll8166 ) phospholipid N-methyltransferase 1.0 0.1 BRADO6616 ( blr6358 ) putative oxioreducatase; putative glucose/ribitol oxioreductase 1.1 0.0 BRADO3450 (blr6296) hypothetical protein...”
XAC2885 phospholipase A1 from Xanthomonas axonopodis pv. citri str. 306
Aligns to 69:169 / 395 (25.6%), covers 37.5% of PF11187, 24.7 bits
- Xanthomonas immunity proteins protect against the cis-toxic effects of their cognate T4SS effectors
Oka, EMBO reports 2024 (no snippet) - Structural basis for effector recognition by an antibacterial type IV secretion system
Oka, Proceedings of the National Academy of Sciences of the United States of America 2022 - “...peptidoglycan layer (XAC2609, XAC0466, XAC3634, XAC1918, XAC0096) or are predicted to have phospholipase activity (XAC0574, XAC2885), while the eighth, XAC3266, is a predicted nuclease ( 13 , 14 , 25 ). X-Tfes are identifiable by the presence of their common XVIPCDs, which were first revealed through...”
- “...citri genome ( 29 ). Nine preys derived from four different proteins (XAC0151, XAC0096, XAC3266, XAC2885) were isolated ( Table S2 ), all of which had been previously identified as X-Tfes ( 13 , 25 ). The previous observations all confirm that the XVIPCDs of different...”
- Global Regulator PhoP is Necessary for Motility, Biofilm Formation, Exoenzyme Production and Virulence of Xanthomonas citri Subsp. citri on Citrus Plants
Wei, Genes 2019 - “...10 12 XAC2609 XAC2609 1.77 2.55 10 135 XAC2610 XAC2610 1.69 3.98 10 128 phlA XAC2885 2.04 1.60 10 42 XAC0323 XAC0323 2.12 2.22 10 26 HI XAC0466 2.22 8.25 10 106 Cw1L XAC3634 2.1 9.38 10 43 log 2 .Fold_change: log 2 (read count_ phoP...”
- The opportunistic pathogen Stenotrophomonas maltophilia utilizes a type IV secretion system for interbacterial killing
Bayer-Santos, PLoS pathogens 2019 - “...maltophilia is probably susceptible to the action of X . citri X-Tfes XAC4264 (unknown function), XAC2885 (putative fosfolipase), XAC2609 (peptidoglycan hydrolase), XAC1918 (putative peptidoglycan hydrolase), XAC0096 (putative HExxH metallopeptidase) and XAC0151 (unknown function) [ 10 ]. Likewise, X . citri can be expected to be susceptible...”
- “...putative X . citri T4SS substrates (residues in parenthesis): XAC4264 (140279), XAC3634 (189306), XAC3266 (735861), XAC2885 (271395), XAC2609 (315431), XAC1918 (477606), XAC1165 (1112), XAC0574 (317440), XAC0466 (488584), XAC0323 (16136), XAC0151 (120254), XAC0096 (506646) [ 10 , 30 ] to BLAST search the genome of S ....”
MAE_RS26180 non-ribosomal peptide synthetase from Microcystis aeruginosa NIES-843
Aligns to 1169:1265 / 1418 (6.8%), covers 37.1% of PF11187, 24.4 bits
- FurA-Dependent Microcystin Synthesis under Copper Stress in Microcystis aeruginosa
Chen, Microorganisms 2020 - “...16 MAE_RS24620 non-ribosomal peptide synthetase 1.1206 10 15 MAE_RS24650 non-ribosomal peptide synthetase 2.8506 10 15 MAE_RS26180 non-ribosomal peptide synthetase 0.0000209 MAE_RS26185 McnC protein 0.000000339 MAE_RS26190 McnB protein 0.0000135 Cysteine MAE_RS05935 cysteine desulfurase 0.019161 MAE_RS06525 cysteine desulfurase 0.0000046 MAE_RS12370 cysteinetRNA ligase 2.1306 10 8 MAE_RS16045 cysteine desufuration...”
LpLQ80_16125 beta-ketoacyl synthase N-terminal-like domain-containing protein from Lactiplantibacillus plantarum
Aligns to 689:777 / 925 (9.6%), covers 25.0% of PF11187, 23.8 bits
CC1G_09365 triacylglycerol lipase from Coprinopsis cinerea okayama7#130
Aligns to 104:187 / 216 (38.9%), covers 22.3% of PF11187, 23.5 bits
Or search for genetic data about PF11187 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory