PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF11523 (DUF3223)

PF11523.8 hits 11 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

DCL_SOLLC / Q42463 Protein DCL, chloroplastic; Defective chloroplasts and leaves protein from Solanum lycopersicum (Tomato) (Lycopersicon esculentum) (see 2 papers)
Aligns to 121:197 / 224 (34.4%), covers 98.7% of PF11523, 99.5 bits

DCL_ARATH / Q9C642 Protein DCL homolog, chloroplastic; AtDCL from Arabidopsis thaliana (Mouse-ear cress) (see paper)
NP_683398 DCL protein (DUF3223) from Arabidopsis thaliana
Aligns to 116:192 / 219 (35.2%), covers 98.7% of PF11523, 95.8 bits

LOC103330828 DNA-directed RNA polymerase V subunit 1 from Prunus mume
Aligns to 1726:1802 / 1855 (4.2%), covers 98.7% of PF11523, 94.7 bits

AT3G46630 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 106:182 / 207 (37.2%), covers 100.0% of PF11523, 92.5 bits

NRPE1_ARATH / Q5D869 DNA-directed RNA polymerase V subunit 1; DNA-directed RNA polymerase D subunit 1b; AtNRPD1b; Nuclear RNA polymerase D 1b; DNA-directed RNA polymerase E subunit 1; Nuclear RNA polymerase E 1; EC 2.7.7.6; Protein DEFECTIVE IN MERISTEM SILENCING 5; Protein DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 3; Protein RNA-DIRECTED DNA METHYLATION DEFECTIVE 1; RNA polymerase IV subunit 1; POL IV 1 from Arabidopsis thaliana (Mouse-ear cress) (see 16 papers)
NP_181532 nuclear RNA polymerase D1B from Arabidopsis thaliana
AT2G40030, NP_181532 NRPD1B; DNA binding / DNA-directed RNA polymerase (RefSeq) from Arabidopsis thaliana
Aligns to 1751:1827 / 1976 (3.9%), covers 98.7% of PF11523, 87.6 bits

LOC105168792 protein DCL, chloroplastic-like from Sesamum indicum
Aligns to 110:183 / 221 (33.5%), covers 98.7% of PF11523, 86.7 bits

EM514_ARATH / Q8L557 Protein EMBRYO DEFECTIVE 514; Protein DOMINO 1 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
NP_201050 EMB514 (DUF3223) from Arabidopsis thaliana
Aligns to 85:158 / 202 (36.6%), covers 98.7% of PF11523, 86.4 bits

TTHERM_00384860 LA motif RNA-binding domain protein from Tetrahymena thermophila SB210
Aligns to 259:331 / 340 (21.5%), covers 100.0% of PF11523, 81.1 bits

NP_001320709 nuclear RNA polymerase D1A from Arabidopsis thaliana
Aligns to 1333:1405 / 1439 (5.1%), covers 100.0% of PF11523, 78.8 bits

NRPD1_ARATH / Q9LQ02 DNA-directed RNA polymerase IV subunit 1; DNA-directed RNA polymerase D subunit 1; AtNRPD1a; Nuclear RNA polymerase D 1a; EC 2.7.7.6; Protein RNA-DIRECTED DNA METHYLATION DEFECTIVE 3; Protein SILENCING DEFECTIVE 4; Protein SILENCING MOVEMENT DEFICIENT 2; RNA polymerase IV subunit 1a; POL IV 1a from Arabidopsis thaliana (Mouse-ear cress) (see 21 papers)
AT1G63020 NRPD1A (NUCLEAR RNA POLYMERASE D 1A); DNA binding / DNA-directed RNA polymerase (RefSeq) from Arabidopsis thaliana
Aligns to 1347:1419 / 1453 (5.0%), covers 100.0% of PF11523, 78.6 bits

XP_020394614 DNA dependent RNA polymerase D largest subunit isoform X1 from Zea mays
Aligns to 1349:1422 / 1444 (5.1%), covers 98.7% of PF11523, 74.7 bits

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory