PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF11622 (DUF3251)

PaperBLAST, GapMind, SitesBLAST, and Sites on a Tree will be down for server maintenance on Friday March 29.

Running HMMer for PF11622

PF11622 hits 6 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YajI / b0412 putative lipoprotein YajI from Escherichia coli K-12 substr. MG1655 (see paper)
b0412 orf, hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 20:179 / 179 (89.4%), covers 97.5% of PF11622, 300.3 bits

Z0513 hypothetical protein from Escherichia coli O157:H7 EDL933
Aligns to 20:179 / 179 (89.4%), covers 97.5% of PF11622, 298.3 bits

c0522 hypothetical protein from Escherichia coli CFT073
Aligns to 20:179 / 179 (89.4%), covers 97.5% of PF11622, 295.8 bits

STM0414 putative outer membrane lipoprotein from Salmonella typhimurium LT2
Aligns to 20:179 / 179 (89.4%), covers 97.5% of PF11622, 294.3 bits

STY0452 putative lipoprotein from Salmonella enterica subsp. enterica serovar Typhi str. CT18
Aligns to 20:179 / 179 (89.4%), covers 97.5% of PF11622, 292.6 bits

FG174_04965 DUF3251 domain-containing protein from Serratia marcescens
Aligns to 20:184 / 186 (88.7%), covers 96.9% of PF11622, 168.7 bits

Or search for genetic data about PF11622 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory